Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF666

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF664 and GFF665 are separated by 9 nucleotidesGFF665 and GFF666 are separated by 80 nucleotidesGFF666 and GFF667 are separated by 41 nucleotidesGFF667 and GFF1075 are separated by 144 nucleotidesGFF1075 and GFF668 overlap by 10 nucleotides GFF664 - FIG00932412: hypothetical protein, at 347,168 to 347,611 GFF664 GFF665 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 347,621 to 348,052 GFF665 GFF666 - Fused spore maturation proteins A and B, at 348,133 to 349,425 GFF666 GFF667 - Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12), at 349,467 to 349,940 GFF667 GFF1075 - tRNA-Arg-CCT, at 350,085 to 350,156 GFF1075 GFF668 - Transcriptional regulator, LysR family, at 350,147 to 351,118 GFF668 Position (kb) 348 349 350Strain fitness (log2 ratio) -2 -1 0 1 2at 347.158 kb on + strandat 347.158 kb on + strandat 347.159 kb on - strandat 347.298 kb on - strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.325 kb on - strand, within GFF664at 347.333 kb on + strand, within GFF664at 347.375 kb on + strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.541 kb on - strand, within GFF664at 347.541 kb on - strand, within GFF664at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.884 kb on - strand, within GFF665at 347.946 kb on + strand, within GFF665at 347.946 kb on + strand, within GFF665at 347.947 kb on - strand, within GFF665at 347.947 kb on - strand, within GFF665at 347.988 kb on + strand, within GFF665at 347.989 kb on - strand, within GFF665at 348.021 kb on + strandat 348.021 kb on + strandat 348.021 kb on + strandat 348.021 kb on + strandat 348.022 kb on - strandat 348.030 kb on + strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.158 kb on + strandat 348.158 kb on + strandat 348.976 kb on + strand, within GFF666at 348.976 kb on + strand, within GFF666at 348.977 kb on - strand, within GFF666at 348.977 kb on - strand, within GFF666at 349.036 kb on + strand, within GFF666at 349.036 kb on + strand, within GFF666at 349.037 kb on - strand, within GFF666at 349.037 kb on - strand, within GFF666at 349.297 kb on + strandat 349.297 kb on + strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.312 kb on + strandat 349.312 kb on + strandat 349.312 kb on + strandat 349.312 kb on + strandat 349.312 kb on + strandat 349.313 kb on - strandat 349.313 kb on - strandat 349.409 kb on - strandat 349.513 kb on + strandat 349.513 kb on + strandat 349.513 kb on + strandat 349.514 kb on - strandat 349.768 kb on + strand, within GFF667at 349.768 kb on + strand, within GFF667at 349.768 kb on + strand, within GFF667at 349.769 kb on - strand, within GFF667at 349.977 kb on + strandat 349.978 kb on - strandat 349.978 kb on - strandat 349.978 kb on - strandat 350.018 kb on + strandat 350.019 kb on - strandat 350.019 kb on - strandat 350.019 kb on - strandat 350.019 kb on - strandat 350.109 kb on + strand, within GFF1075at 350.109 kb on + strand, within GFF1075at 350.110 kb on - strand, within GFF1075at 350.110 kb on - strand, within GFF1075at 350.110 kb on - strand, within GFF1075at 350.114 kb on - strand, within GFF1075at 350.114 kb on - strand, within GFF1075at 350.121 kb on - strand, within GFF1075at 350.148 kb on + strandat 350.148 kb on + strandat 350.149 kb on - strandat 350.238 kb on + strandat 350.238 kb on + strandat 350.238 kb on + strandat 350.238 kb on + strandat 350.239 kb on - strandat 350.239 kb on - strandat 350.385 kb on + strand, within GFF668at 350.385 kb on + strand, within GFF668at 350.385 kb on + strand, within GFF668at 350.386 kb on - strand, within GFF668at 350.386 kb on - strand, within GFF668at 350.386 kb on - strand, within GFF668

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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347,158 + +0.4
347,158 + -0.3
347,159 - -0.3
347,298 - GFF664 0.29 +0.3
347,324 + GFF664 0.35 +0.3
347,324 + GFF664 0.35 +1.9
347,324 + GFF664 0.35 +1.2
347,325 - GFF664 0.35 -1.1
347,333 + GFF664 0.37 -0.5
347,375 + GFF664 0.47 -0.1
347,376 - GFF664 0.47 +1.0
347,376 - GFF664 0.47 +0.1
347,376 - GFF664 0.47 -1.3
347,376 - GFF664 0.47 +0.6
347,376 - GFF664 0.47 +0.7
347,540 + GFF664 0.84 -0.3
347,540 + GFF664 0.84 +0.3
347,540 + GFF664 0.84 +0.4
347,540 + GFF664 0.84 +0.3
347,540 + GFF664 0.84 -0.5
347,540 + GFF664 0.84 +0.5
347,541 - GFF664 0.84 +0.1
347,541 - GFF664 0.84 -0.1
347,883 + GFF665 0.61 +0.2
347,883 + GFF665 0.61 -0.4
347,883 + GFF665 0.61 -0.0
347,883 + GFF665 0.61 +1.1
347,883 + GFF665 0.61 +0.4
347,883 + GFF665 0.61 +0.2
347,883 + GFF665 0.61 -0.4
347,884 - GFF665 0.61 -2.1
347,946 + GFF665 0.75 -0.0
347,946 + GFF665 0.75 +0.3
347,947 - GFF665 0.75 -0.2
347,947 - GFF665 0.75 +0.3
347,988 + GFF665 0.85 -1.2
347,989 - GFF665 0.85 +0.1
348,021 + -0.2
348,021 + -0.2
348,021 + -0.0
348,021 + +1.1
348,022 - -0.4
348,030 + -2.4
348,031 - -0.6
348,031 - +1.4
348,031 - -0.6
348,031 - +0.2
348,158 + +0.4
348,158 + +0.0
348,976 + GFF666 0.65 +0.9
348,976 + GFF666 0.65 +0.1
348,977 - GFF666 0.65 -0.1
348,977 - GFF666 0.65 +0.9
349,036 + GFF666 0.70 +0.6
349,036 + GFF666 0.70 +0.0
349,037 - GFF666 0.70 +1.0
349,037 - GFF666 0.70 +0.2
349,297 + -1.3
349,297 + +0.4
349,298 - -0.1
349,298 - -0.1
349,298 - +0.1
349,298 - -2.2
349,298 - +0.1
349,298 - +0.7
349,298 - +1.1
349,312 + -0.2
349,312 + +0.0
349,312 + +0.6
349,312 + -0.0
349,312 + +0.4
349,313 - +1.2
349,313 - -0.4
349,409 - -0.1
349,513 + +0.1
349,513 + -0.1
349,513 + +2.3
349,514 - +0.4
349,768 + GFF667 0.64 -0.6
349,768 + GFF667 0.64 +0.6
349,768 + GFF667 0.64 +0.2
349,769 - GFF667 0.64 +1.3
349,977 + +1.2
349,978 - +0.7
349,978 - +0.2
349,978 - -0.5
350,018 + -0.6
350,019 - -0.1
350,019 - -0.3
350,019 - +0.1
350,019 - +1.0
350,109 + GFF1075 0.33 +0.0
350,109 + GFF1075 0.33 -0.1
350,110 - GFF1075 0.35 +0.6
350,110 - GFF1075 0.35 -1.0
350,110 - GFF1075 0.35 -0.3
350,114 - GFF1075 0.40 -0.5
350,114 - GFF1075 0.40 +0.0
350,121 - GFF1075 0.50 -0.7
350,148 + +0.8
350,148 + -1.1
350,149 - -2.4
350,238 + +0.2
350,238 + -0.3
350,238 + -0.4
350,238 + -0.6
350,239 - -0.1
350,239 - -0.1
350,385 + GFF668 0.24 +0.3
350,385 + GFF668 0.24 -0.1
350,385 + GFF668 0.24 -0.7
350,386 - GFF668 0.25 -1.1
350,386 - GFF668 0.25 -0.1
350,386 - GFF668 0.25 -0.7

Or see this region's nucleotide sequence