Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1074 and GFF619 are separated by 37 nucleotides GFF619 and GFF620 are separated by 145 nucleotides GFF620 and GFF621 are separated by 2 nucleotides GFF621 and GFF622 overlap by 4 nucleotides
GFF1074 - tRNA-Met-CAT, at 295,369 to 295,442
GFF1074
GFF619 - Enoyl-CoA hydratase (EC 4.2.1.17), at 295,480 to 296,268
GFF619
GFF620 - Enoyl-CoA hydratase (EC 4.2.1.17), at 296,414 to 297,208
GFF620
GFF621 - Phenylacetic acid degradation protein PaaD, thioesterase, at 297,211 to 297,651
GFF621
GFF622 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 297,648 to 298,943
GFF622
Position (kb) 296
297
298 Strain fitness (log2 ratio) -2
-1
0
1 at 295.460 kb on - strand at 295.460 kb on - strand at 296.009 kb on + strand, within GFF619 at 296.009 kb on + strand, within GFF619 at 296.010 kb on - strand, within GFF619 at 296.021 kb on + strand, within GFF619 at 296.022 kb on - strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.311 kb on + strand at 296.311 kb on + strand at 296.311 kb on + strand at 296.311 kb on + strand at 296.311 kb on + strand at 296.311 kb on + strand at 296.312 kb on - strand at 296.312 kb on - strand at 296.312 kb on - strand at 296.312 kb on - strand at 296.312 kb on - strand at 296.313 kb on + strand at 296.313 kb on + strand at 296.313 kb on + strand at 296.314 kb on - strand at 296.314 kb on - strand at 296.368 kb on - strand at 296.435 kb on + strand at 296.435 kb on + strand at 296.436 kb on - strand at 297.149 kb on + strand at 297.150 kb on - strand at 297.547 kb on + strand, within GFF621 at 297.547 kb on + strand, within GFF621 at 297.547 kb on + strand, within GFF621 at 297.867 kb on + strand, within GFF622 at 297.867 kb on + strand, within GFF622 at 297.868 kb on - strand, within GFF622 at 297.868 kb on - strand, within GFF622 at 297.868 kb on - strand, within GFF622 at 298.050 kb on + strand, within GFF622 at 298.051 kb on - strand, within GFF622 at 298.089 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on - strand, within GFF622 at 298.204 kb on - strand, within GFF622 at 298.204 kb on - strand, within GFF622
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 295,460 - +0.5 295,460 - -0.5 296,009 + GFF619 0.67 +0.3 296,009 + GFF619 0.67 -1.2 296,010 - GFF619 0.67 -0.1 296,021 + GFF619 0.69 -0.5 296,022 - GFF619 0.69 -0.5 296,039 + GFF619 0.71 -0.6 296,039 + GFF619 0.71 -1.5 296,039 + GFF619 0.71 +0.1 296,039 + GFF619 0.71 -0.0 296,039 + GFF619 0.71 +0.7 296,039 + GFF619 0.71 +0.0 296,039 + GFF619 0.71 +0.1 296,040 - GFF619 0.71 -2.4 296,040 - GFF619 0.71 -0.5 296,040 - GFF619 0.71 -0.1 296,040 - GFF619 0.71 +0.5 296,040 - GFF619 0.71 -0.4 296,040 - GFF619 0.71 -0.9 296,040 - GFF619 0.71 +0.7 296,040 - GFF619 0.71 -0.1 296,311 + -0.7 296,311 + -0.4 296,311 + -0.9 296,311 + +0.5 296,311 + -0.8 296,311 + -0.5 296,312 - +0.1 296,312 - -0.1 296,312 - -0.2 296,312 - +0.8 296,312 - +0.1 296,313 + -0.1 296,313 + +0.1 296,313 + -1.1 296,314 - +0.5 296,314 - +0.1 296,368 - +0.0 296,435 + -0.1 296,435 + +0.2 296,436 - +0.1 297,149 + +0.1 297,150 - -2.7 297,547 + GFF621 0.76 +0.0 297,547 + GFF621 0.76 -0.0 297,547 + GFF621 0.76 +0.1 297,867 + GFF622 0.17 -0.9 297,867 + GFF622 0.17 -0.1 297,868 - GFF622 0.17 -1.7 297,868 - GFF622 0.17 +0.1 297,868 - GFF622 0.17 +0.5 298,050 + GFF622 0.31 -0.0 298,051 - GFF622 0.31 +0.2 298,089 + GFF622 0.34 -0.4 298,203 + GFF622 0.43 -0.1 298,203 + GFF622 0.43 -0.2 298,203 + GFF622 0.43 +0.1 298,203 + GFF622 0.43 -0.2 298,203 - GFF622 0.43 +0.2 298,204 - GFF622 0.43 +0.7 298,204 - GFF622 0.43 -0.5
Or see this region's nucleotide sequence