Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5830 and GFF5831 overlap by 4 nucleotides GFF5831 and GFF5832 overlap by 23 nucleotides GFF5832 and GFF5833 overlap by 1 nucleotides GFF5833 and GFF5834 are separated by 47 nucleotides GFF5834 and GFF5835 are separated by 13 nucleotides
GFF5830 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 28,511 to 29,368
GFF5830
GFF5831 - Carbonic anhydrase (EC 4.2.1.1), at 29,365 to 30,063
GFF5831
GFF5832 - Dioxygenases related to 2-nitropropane dioxygenase, at 30,041 to 30,328
GFF5832
GFF5833 - Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1), at 30,328 to 32,760
GFF5833
GFF5834 - nitroreductase, at 32,808 to 33,419
GFF5834
GFF5835 - FIG00933811: hypothetical protein, at 33,433 to 33,837
GFF5835
Position (kb) 30
31
32
33 Strain fitness (log2 ratio) -2
-1
0
1 at 29.435 kb on - strand, within GFF5831 at 30.209 kb on + strand, within GFF5832 at 30.209 kb on + strand, within GFF5832 at 30.210 kb on - strand, within GFF5832 at 30.210 kb on - strand, within GFF5832 at 30.210 kb on - strand, within GFF5832 at 30.210 kb on - strand, within GFF5832 at 30.210 kb on - strand, within GFF5832 at 30.460 kb on + strand at 31.514 kb on - strand, within GFF5833 at 31.811 kb on - strand, within GFF5833 at 32.039 kb on - strand, within GFF5833
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 29,435 - GFF5831 0.10 +0.9 30,209 + GFF5832 0.58 +0.8 30,209 + GFF5832 0.58 +0.4 30,210 - GFF5832 0.59 -0.2 30,210 - GFF5832 0.59 +0.3 30,210 - GFF5832 0.59 +0.2 30,210 - GFF5832 0.59 -0.1 30,210 - GFF5832 0.59 -1.9 30,460 + -2.0 31,514 - GFF5833 0.49 -1.2 31,811 - GFF5833 0.61 +0.9 32,039 - GFF5833 0.70 +0.5
Or see this region's nucleotide sequence