Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5776

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,803,761	+				+0.9
2,803,761	+				+1.0
2,803,761	+				+0.1
2,803,761	+				-0.9
2,803,761	+				+0.2
2,803,761	+				-0.6
2,803,762	-				+0.1
2,803,762	-				+0.2
2,803,762	-				-0.4
2,803,762	-				+0.1
2,803,762	-				-0.4
2,803,762	-				-0.7
2,803,762	-				-0.5
2,803,762	-				-0.9
2,804,280	+		GFF5775	0.56	+0.7
2,804,280	+		GFF5775	0.56	+0.3
2,804,311	-		GFF5775	0.59	-1.2
2,804,311	-		GFF5775	0.59	+0.0
2,804,472	+		GFF5775	0.77	-0.3
2,804,472	+		GFF5775	0.77	-1.8
2,804,472	+		GFF5775	0.77	+0.2
2,804,472	+		GFF5775	0.77	-0.0
2,804,473	-		GFF5775	0.77	-0.4
2,804,473	-		GFF5775	0.77	-0.7
2,804,560	-		GFF5775	0.86	-0.4
2,804,694	+				-1.4
2,804,694	+				-2.8
2,804,694	+				+0.3
2,804,695	-				-0.6
2,804,773	-				+0.4
2,804,823	+		GFF5776	0.13	+0.3
2,804,823	+		GFF5776	0.13	-0.6
2,804,823	+		GFF5776	0.13	+0.1
2,804,823	+		GFF5776	0.13	-0.0
2,804,823	+		GFF5776	0.13	-0.6
2,804,823	+		GFF5776	0.13	-0.3
2,804,823	+		GFF5776	0.13	-0.5
2,804,824	-		GFF5776	0.14	+0.0
2,804,824	-		GFF5776	0.14	-0.2
2,804,824	-		GFF5776	0.14	-0.4
2,805,786	+				-0.1
2,805,786	+				-1.6
2,805,786	+				+0.6
2,805,786	+				+0.2
2,806,088	+		GFF5777	0.31	-1.4
2,806,247	+		GFF5777	0.47	-0.7
2,806,247	+		GFF5777	0.47	+0.1
2,806,247	+		GFF5777	0.47	+0.1
2,806,248	-		GFF5777	0.47	-0.4
2,806,248	-		GFF5777	0.47	-0.2
2,806,248	-		GFF5777	0.47	-0.4
2,806,248	-		GFF5777	0.47	+0.0
2,806,248	-		GFF5777	0.47	-0.3
2,806,248	-		GFF5777	0.47	+0.1
2,806,248	-		GFF5777	0.47	-0.5
2,806,334	+		GFF5777	0.56	-0.9
2,806,335	-		GFF5777	0.56	-0.4