Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5708

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,730,859	-				+1.6
2,730,859	-				+0.8
2,731,008	+		GFF5707	0.24	-1.5
2,731,009	-		GFF5707	0.25	-0.2
2,731,009	-		GFF5707	0.25	+0.6
2,731,227	+		GFF5707	0.47	-1.2
2,731,228	-		GFF5707	0.47	-0.0
2,731,560	+		GFF5707	0.81	+0.5
2,731,683	+				+0.5
2,731,684	-				-1.2
2,731,684	-				-0.4
2,731,782	+				+0.3
2,731,782	+				+0.9
2,731,783	-				+0.5
2,731,783	-				-0.2
2,732,133	+		GFF5708	0.35	+0.8
2,732,163	+		GFF5708	0.38	-0.7
2,732,466	+		GFF5708	0.67	-0.3
2,732,467	-		GFF5708	0.67	-0.4
2,732,514	+		GFF5708	0.72	+0.1
2,732,515	-		GFF5708	0.72	+0.2
2,732,625	+		GFF5708	0.83	-0.4
2,732,626	-		GFF5708	0.83	-1.2