Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5698

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5696 and GFF5697 are separated by 4 nucleotidesGFF5697 and GFF5698 overlap by 4 nucleotidesGFF5698 and GFF5699 are separated by 7 nucleotidesGFF5699 and GFF5700 are separated by 42 nucleotides GFF5696 - PROBABLE TRANSMEMBRANE PROTEIN, at 2,720,126 to 2,721,022 GFF5696 GFF5697 - Creatinine amidohydrolase (EC 3.5.2.10), at 2,721,027 to 2,721,806 GFF5697 GFF5698 - Isochorismatase (EC 3.3.2.1), at 2,721,803 to 2,722,426 GFF5698 GFF5699 - hypothetical protein, at 2,722,434 to 2,723,183 GFF5699 GFF5700 - extracellular solute-binding protein, family 3, at 2,723,226 to 2,724,113 GFF5700 Position (kb) 2721 2722 2723Strain fitness (log2 ratio) -1 0 1at 2721.070 kb on - strandat 2721.478 kb on - strand, within GFF5697at 2721.586 kb on - strand, within GFF5697at 2722.887 kb on + strand, within GFF5699

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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2,721,070 - +0.3
2,721,478 - GFF5697 0.58 -1.6
2,721,586 - GFF5697 0.72 +0.8
2,722,887 + GFF5699 0.60 +0.7

Or see this region's nucleotide sequence