Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5663

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5662 and GFF5663 are separated by 4 nucleotidesGFF5663 and GFF5664 overlap by 4 nucleotidesGFF5664 and GFF5665 are separated by 11 nucleotides GFF5662 - 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / Enoyl CoA hydratase (EC 4.2.1.17), at 2,685,721 to 2,687,247 GFF5662 GFF5663 - Enoyl-CoA hydratase (EC 4.2.1.17), at 2,687,252 to 2,688,028 GFF5663 GFF5664 - Enoyl-CoA hydratase (EC 4.2.1.17), at 2,688,025 to 2,688,804 GFF5664 GFF5665 - Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16), at 2,688,816 to 2,690,018 GFF5665 Position (kb) 2687 2688 2689Strain fitness (log2 ratio) -1 0 1at 2686.385 kb on + strand, within GFF5662at 2686.643 kb on + strand, within GFF5662at 2687.680 kb on - strand, within GFF5663at 2688.078 kb on - strandat 2688.078 kb on - strandat 2688.946 kb on + strand, within GFF5665at 2688.955 kb on + strand, within GFF5665at 2688.955 kb on + strand, within GFF5665at 2688.955 kb on + strand, within GFF5665

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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2,686,385 + GFF5662 0.43 -0.0
2,686,643 + GFF5662 0.60 -0.2
2,687,680 - GFF5663 0.55 -1.1
2,688,078 - +0.2
2,688,078 - +0.7
2,688,946 + GFF5665 0.11 -0.1
2,688,955 + GFF5665 0.12 -0.2
2,688,955 + GFF5665 0.12 -1.0
2,688,955 + GFF5665 0.12 +0.4

Or see this region's nucleotide sequence