Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5518

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,520,338	+		GFF5517	0.52	-0.3
2,520,338	+		GFF5517	0.52	+0.5
2,520,338	+		GFF5517	0.52	-0.2
2,520,338	+		GFF5517	0.52	-0.0
2,520,338	+		GFF5517	0.52	-0.8
2,520,339	-		GFF5517	0.52	-1.4
2,520,339	-		GFF5517	0.52	-0.6
2,520,339	-		GFF5517	0.52	+1.0
2,520,339	-		GFF5517	0.52	-0.7
2,520,339	-		GFF5517	0.52	-1.3
2,520,339	-		GFF5517	0.52	-0.2
2,520,371	+		GFF5517	0.54	+1.0
2,520,398	+		GFF5517	0.55	-0.6
2,520,451	+		GFF5517	0.58	-1.2
2,520,452	-		GFF5517	0.58	-0.7
2,520,609	-		GFF5517	0.67	+0.0
2,520,609	-		GFF5517	0.67	-2.4
2,520,609	-		GFF5517	0.67	+0.2
2,520,641	+		GFF5517	0.69	-0.1
2,520,641	+		GFF5517	0.69	+1.9
2,520,641	+		GFF5517	0.69	+0.0
2,520,641	+		GFF5517	0.69	+0.5
2,520,641	+		GFF5517	0.69	+0.3
2,520,642	-		GFF5517	0.69	-0.4
2,520,642	-		GFF5517	0.69	+0.0
2,520,642	-		GFF5517	0.69	-0.2
2,520,642	-		GFF5517	0.69	+0.7
2,520,642	-		GFF5517	0.69	+0.3
2,520,758	+		GFF5517	0.75	-0.6
2,520,758	+		GFF5517	0.75	+1.9
2,520,759	-		GFF5517	0.75	-0.1
2,520,759	-		GFF5517	0.75	+0.7
2,520,951	-		GFF5517	0.86	-1.4
2,521,193	+				+1.5
2,521,193	+				-0.5
2,521,194	-				+0.2
2,521,194	-				-0.2
2,521,194	-				+1.2
2,521,194	-				-0.9
2,523,041	+				-0.4
2,523,041	+				+1.4
2,523,041	+				-1.6
2,523,041	+				+0.5
2,523,042	-				+0.8
2,523,042	-				-0.3
2,523,042	-				+0.6
2,523,128	+				+0.3
2,523,128	+				-1.7
2,523,129	-				+0.2
2,523,129	-				+0.1
2,523,135	+				+1.4
2,523,136	-				-0.4
2,523,136	-				-0.2
2,523,160	+				+0.2
2,523,188	+				+0.1
2,523,189	-				-0.2
2,523,189	-				+0.5
2,523,189	-				-1.0
2,523,189	-				+1.2
2,523,190	+				+0.2
2,523,190	+				+0.1
2,523,190	+				-1.8
2,523,191	-				-1.5
2,523,191	-				+0.6
2,523,191	-				+0.4
2,523,206	+				+0.6
2,523,206	+				-0.1
2,523,206	+				-0.1