Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF55

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
55,769	-		GFF54	0.17	+0.3
56,165	-		GFF54	0.52	-0.2
56,165	-		GFF54	0.52	+0.3
56,165	-		GFF54	0.52	-1.0
56,209	+		GFF54	0.56	-0.2
56,209	+		GFF54	0.56	-1.2
56,287	+		GFF54	0.63	+1.1
56,311	+		GFF54	0.65	-0.2
56,513	-		GFF54	0.83	-0.2
56,618	-				+0.1
56,953	-		GFF55	0.36	+0.6
57,166	-		GFF55	0.66	-0.9
57,190	-		GFF55	0.69	+1.0
57,568	+		GFF56	0.18	+0.8
57,686	-		GFF56	0.32	+0.4
57,832	+		GFF56	0.49	-0.2
57,833	-		GFF56	0.49	+0.6
58,034	-		GFF56	0.72	-0.1
58,219	+				+0.8
58,220	-				+0.6
58,220	-				+1.2