Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF547 and GFF548 are separated by 94 nucleotides GFF548 and GFF549 are separated by 245 nucleotides GFF549 and GFF550 are separated by 311 nucleotides
GFF547 - Tyrosine recombinase XerC, at 215,014 to 216,045
GFF547
GFF548 - Blr3520 protein homolog, hypothetical protein, at 216,140 to 216,586
GFF548
GFF549 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 216,832 to 217,926
GFF549
GFF550 - C4-type zinc finger protein, DksA/TraR family, at 218,238 to 219,362
GFF550
Position (kb) 216
217
218 Strain fitness (log2 ratio) -2
-1
0
1
2 at 215.906 kb on - strand, within GFF547 at 215.941 kb on + strand, within GFF547 at 215.942 kb on - strand at 215.942 kb on - strand at 216.084 kb on + strand at 216.084 kb on + strand at 216.084 kb on + strand at 216.084 kb on + strand at 216.085 kb on - strand at 216.248 kb on + strand, within GFF548 at 216.248 kb on + strand, within GFF548 at 216.248 kb on + strand, within GFF548 at 216.248 kb on + strand, within GFF548 at 216.249 kb on - strand, within GFF548 at 216.572 kb on + strand at 216.573 kb on - strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.997 kb on + strand, within GFF549 at 217.073 kb on + strand, within GFF549 at 217.073 kb on + strand, within GFF549 at 217.073 kb on + strand, within GFF549 at 217.074 kb on - strand, within GFF549 at 217.074 kb on - strand, within GFF549 at 217.195 kb on + strand, within GFF549 at 217.195 kb on + strand, within GFF549 at 217.195 kb on + strand, within GFF549 at 217.195 kb on + strand, within GFF549 at 217.196 kb on - strand, within GFF549 at 217.196 kb on - strand, within GFF549 at 217.196 kb on - strand, within GFF549 at 217.196 kb on - strand, within GFF549 at 217.196 kb on - strand, within GFF549 at 217.196 kb on - strand, within GFF549 at 217.196 kb on - strand, within GFF549 at 217.652 kb on + strand, within GFF549 at 217.717 kb on + strand, within GFF549 at 217.717 kb on + strand, within GFF549 at 217.717 kb on + strand, within GFF549 at 217.718 kb on - strand, within GFF549 at 217.718 kb on - strand, within GFF549 at 217.738 kb on + strand, within GFF549 at 217.738 kb on + strand, within GFF549 at 217.738 kb on + strand, within GFF549 at 217.739 kb on - strand, within GFF549 at 217.739 kb on - strand, within GFF549 at 217.739 kb on - strand, within GFF549 at 218.053 kb on - strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.135 kb on - strand at 218.135 kb on - strand at 218.135 kb on - strand at 218.135 kb on - strand at 218.135 kb on - strand at 218.136 kb on + strand at 218.136 kb on + strand at 218.136 kb on + strand at 218.136 kb on + strand at 218.136 kb on + strand at 218.137 kb on - strand at 218.137 kb on - strand at 218.137 kb on - strand at 218.137 kb on - strand at 218.137 kb on - strand at 218.861 kb on + strand, within GFF550 at 218.862 kb on - strand, within GFF550
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 215,906 - GFF547 0.86 -1.5 215,941 + GFF547 0.90 +0.1 215,942 - -0.1 215,942 - -0.3 216,084 + -0.3 216,084 + -0.4 216,084 + +0.3 216,084 + +1.1 216,085 - +0.3 216,248 + GFF548 0.24 +0.0 216,248 + GFF548 0.24 -1.5 216,248 + GFF548 0.24 -0.3 216,248 + GFF548 0.24 +1.1 216,249 - GFF548 0.24 -1.5 216,572 + -0.1 216,573 - +0.5 216,781 + -0.5 216,781 + +1.0 216,781 + +0.0 216,781 + -0.2 216,781 + -0.1 216,781 + +0.2 216,781 + +0.5 216,781 + -1.0 216,781 + +1.3 216,782 - +0.4 216,782 - -0.2 216,782 - +0.0 216,782 - -1.1 216,782 - -1.3 216,782 - -0.9 216,782 - +0.2 216,782 - +0.3 216,782 - -0.7 216,782 - +0.2 216,997 + GFF549 0.15 -0.9 217,073 + GFF549 0.22 -0.9 217,073 + GFF549 0.22 -0.1 217,073 + GFF549 0.22 -0.6 217,074 - GFF549 0.22 +0.2 217,074 - GFF549 0.22 -0.7 217,195 + GFF549 0.33 +0.2 217,195 + GFF549 0.33 -0.1 217,195 + GFF549 0.33 -0.8 217,195 + GFF549 0.33 -0.4 217,196 - GFF549 0.33 +1.9 217,196 - GFF549 0.33 -0.2 217,196 - GFF549 0.33 -0.0 217,196 - GFF549 0.33 +0.3 217,196 - GFF549 0.33 -0.0 217,196 - GFF549 0.33 -0.2 217,196 - GFF549 0.33 -1.0 217,652 + GFF549 0.75 +0.1 217,717 + GFF549 0.81 -1.2 217,717 + GFF549 0.81 -0.0 217,717 + GFF549 0.81 -0.1 217,718 - GFF549 0.81 +0.2 217,718 - GFF549 0.81 -1.0 217,738 + GFF549 0.83 -0.7 217,738 + GFF549 0.83 +0.1 217,738 + GFF549 0.83 +0.1 217,739 - GFF549 0.83 +1.1 217,739 - GFF549 0.83 -0.1 217,739 - GFF549 0.83 +0.2 218,053 - +1.3 218,134 + +0.5 218,134 + -0.3 218,134 + -0.1 218,134 + -0.3 218,134 + +0.7 218,134 + +0.1 218,134 + +0.6 218,134 + -0.5 218,134 + +1.7 218,134 + +0.7 218,134 + +0.2 218,134 + +0.8 218,135 - +1.5 218,135 - +0.2 218,135 - +0.9 218,135 - +0.3 218,135 - -0.8 218,136 + -0.1 218,136 + +0.1 218,136 + -1.7 218,136 + +0.3 218,136 + -1.0 218,137 - -0.6 218,137 - -2.1 218,137 - +0.4 218,137 - +0.6 218,137 - +0.6 218,861 + GFF550 0.55 -0.1 218,862 - GFF550 0.55 +0.1
Or see this region's nucleotide sequence