Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5485

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,485,065	+				+0.4
2,485,065	+				-0.4
2,485,066	-				+0.4
2,485,338	-		GFF5484	0.28	-2.5
2,485,831	-				-0.1
2,486,669	-		GFF5485	0.43	-0.2
2,486,688	+		GFF5485	0.44	+1.2
2,486,689	-		GFF5485	0.44	-1.1
2,486,766	+		GFF5485	0.48	+0.4
2,486,766	+		GFF5485	0.48	-0.4
2,486,766	+		GFF5485	0.48	+0.8
2,486,766	+		GFF5485	0.48	-1.8
2,486,767	-		GFF5485	0.48	-1.3
2,486,767	-		GFF5485	0.48	+0.6
2,486,767	-		GFF5485	0.48	-1.2
2,486,767	-		GFF5485	0.48	-0.8
2,487,207	+		GFF5485	0.72	-1.1
2,487,207	+		GFF5485	0.72	+1.2
2,487,207	+		GFF5485	0.72	+0.4
2,487,207	+		GFF5485	0.72	-0.5
2,487,207	+		GFF5485	0.72	-1.4
2,487,207	+		GFF5485	0.72	-0.2
2,487,207	+		GFF5485	0.72	-0.7
2,487,208	-		GFF5485	0.72	-1.5
2,487,208	-		GFF5485	0.72	+0.4
2,487,208	-		GFF5485	0.72	+0.8
2,487,208	-		GFF5485	0.72	+0.6
2,487,208	-		GFF5485	0.72	-1.4
2,487,276	+		GFF5485	0.75	-0.1
2,487,276	+		GFF5485	0.75	+0.3
2,487,276	+		GFF5485	0.75	-0.2
2,487,277	-		GFF5485	0.75	-0.4
2,487,277	-		GFF5485	0.75	+0.6
2,487,866	+				-0.9
2,487,905	+				+1.5
2,487,905	+				+0.5
2,487,905	+				+0.7
2,487,905	+				+0.2
2,487,905	+				-0.1
2,487,906	-				-0.2
2,487,906	-				-0.1
2,487,906	-				-1.6
2,487,906	-				-0.2
2,487,906	-				+0.3
2,487,906	-				+0.3
2,487,906	-				-0.5
2,487,906	-				+0.2
2,488,028	+				+0.3
2,488,028	+				+0.9
2,488,166	+		GFF5486	0.20	+0.6
2,488,166	+		GFF5486	0.20	-1.3
2,488,167	-		GFF5486	0.20	+0.5
2,488,545	-		GFF5486	0.48	+0.8
2,488,545	-		GFF5486	0.48	-0.7
2,488,631	+		GFF5486	0.54	-1.4