Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5458

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,461,113	+				+0.9
2,461,192	+				-1.9
2,461,193	-				-0.0
2,461,216	+				+0.3
2,461,219	+		GFF5457	0.10	-0.4
2,461,219	+		GFF5457	0.10	-0.3
2,461,220	-		GFF5457	0.10	-0.1
2,461,220	-		GFF5457	0.10	+0.3
2,461,474	+		GFF5457	0.38	+0.4
2,461,474	+		GFF5457	0.38	+1.4
2,461,474	+		GFF5457	0.38	-0.3
2,461,475	-		GFF5457	0.38	+0.7
2,461,475	-		GFF5457	0.38	+1.0
2,461,475	-		GFF5457	0.38	+0.1
2,461,475	-		GFF5457	0.38	-0.1
2,461,492	+		GFF5457	0.40	-0.8
2,461,492	+		GFF5457	0.40	-1.9
2,461,492	+		GFF5457	0.40	-0.3
2,461,493	-		GFF5457	0.40	+0.4
2,461,493	-		GFF5457	0.40	-0.8
2,461,493	-		GFF5457	0.40	-0.2
2,461,525	+		GFF5457	0.43	+0.7
2,461,525	+		GFF5457	0.43	-0.0
2,461,525	+		GFF5457	0.43	+1.0
2,461,525	+		GFF5457	0.43	+0.4
2,461,755	+		GFF5457	0.68	+0.1
2,461,867	+		GFF5457	0.80	-0.0
2,461,981	+				+0.2
2,461,982	-				+0.7
2,461,982	-				+0.8
2,461,982	-				-0.7
2,461,982	-				+0.6
2,462,009	-				-0.3
2,462,321	-		GFF5458	0.32	-0.2
2,462,321	-		GFF5458	0.32	-0.2
2,462,335	+		GFF5458	0.34	-0.3
2,462,674	+		GFF5458	0.82	-0.9
2,462,675	-		GFF5458	0.82	-1.0
2,462,675	-		GFF5458	0.82	-0.0
2,463,070	+				-0.6
2,463,070	+				-0.3
2,463,071	-				-0.2
2,463,071	-				-1.4
2,463,071	-				-0.3
2,463,076	+				-0.2
2,463,077	-				-0.4
2,463,077	-				+0.1
2,463,454	-		GFF5460	0.56	+0.9
2,463,552	+		GFF5460	0.73	-0.4
2,463,776	-				+0.5