Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5455

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,458,978	+		GFF5454	0.29	-0.0
2,458,979	-		GFF5454	0.29	-0.6
2,458,979	-		GFF5454	0.29	+0.1
2,459,029	+		GFF5454	0.34	-0.1
2,459,030	-		GFF5454	0.34	-0.7
2,459,030	-		GFF5454	0.34	-0.3
2,459,183	-		GFF5454	0.49	+0.5
2,459,955	+		GFF5455	0.31	-2.6
2,459,955	+		GFF5455	0.31	-0.0
2,460,480	+		GFF5455	0.84	+1.9
2,460,480	+		GFF5455	0.84	+0.5
2,460,481	-		GFF5455	0.84	+0.7
2,460,481	-		GFF5455	0.84	-1.2
2,460,481	-		GFF5455	0.84	+0.7
2,460,636	-				+0.1
2,460,683	+		GFF5456	0.11	-0.6
2,460,731	+		GFF5456	0.23	+0.4
2,460,732	-		GFF5456	0.23	-1.5
2,460,732	-		GFF5456	0.23	+0.2
2,460,977	+		GFF5456	0.80	-0.4
2,460,978	-		GFF5456	0.80	+1.8
2,461,113	+				+0.9
2,461,192	+				-1.9
2,461,193	-				-0.0
2,461,216	+				+0.3
2,461,219	+		GFF5457	0.10	-0.4
2,461,219	+		GFF5457	0.10	-0.3
2,461,220	-		GFF5457	0.10	-0.1
2,461,220	-		GFF5457	0.10	+0.3
2,461,474	+		GFF5457	0.38	+0.4
2,461,474	+		GFF5457	0.38	+1.4
2,461,474	+		GFF5457	0.38	-0.3
2,461,475	-		GFF5457	0.38	+0.7
2,461,475	-		GFF5457	0.38	+1.0
2,461,475	-		GFF5457	0.38	+0.1
2,461,475	-		GFF5457	0.38	-0.1
2,461,492	+		GFF5457	0.40	-0.8
2,461,492	+		GFF5457	0.40	-1.9
2,461,492	+		GFF5457	0.40	-0.3
2,461,493	-		GFF5457	0.40	+0.4
2,461,493	-		GFF5457	0.40	-0.8
2,461,493	-		GFF5457	0.40	-0.2
2,461,525	+		GFF5457	0.43	+0.7
2,461,525	+		GFF5457	0.43	-0.0
2,461,525	+		GFF5457	0.43	+1.0
2,461,525	+		GFF5457	0.43	+0.4