Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5440

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5439 and GFF5440 are separated by 126 nucleotidesGFF5440 and GFF5441 are separated by 23 nucleotidesGFF5441 and GFF5442 are separated by 44 nucleotides GFF5439 - Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5), at 2,441,685 to 2,442,899 GFF5439 GFF5440 - CTP synthase (EC 6.3.4.2), at 2,443,026 to 2,444,687 GFF5440 GFF5441 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 2,444,711 to 2,445,568 GFF5441 GFF5442 - Enolase (EC 4.2.1.11), at 2,445,613 to 2,446,899 GFF5442 Position (kb) 2443 2444 2445Strain fitness (log2 ratio) -3 -2 -1 0 1at 2442.910 kb on + strandat 2442.910 kb on + strandat 2442.910 kb on + strandat 2442.911 kb on - strandat 2442.911 kb on - strandat 2442.911 kb on - strandat 2442.911 kb on - strandat 2442.911 kb on - strandat 2442.967 kb on + strandat 2445.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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2,442,910 + -0.6
2,442,910 + -1.4
2,442,910 + -0.4
2,442,911 - +0.7
2,442,911 - -0.6
2,442,911 - -0.8
2,442,911 - -0.1
2,442,911 - -0.1
2,442,967 + -0.2
2,445,589 - -2.8

Or see this region's nucleotide sequence