Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF542 and GFF543 are separated by 60 nucleotides GFF543 and GFF544 overlap by 4 nucleotides GFF544 and GFF545 overlap by 6 nucleotides
GFF542 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 210,859 to 212,154
GFF542
GFF543 - ABC transporter ATP-binding protein, at 212,215 to 213,240
GFF543
GFF544 - hypothetical protein, at 213,237 to 213,419
GFF544
GFF545 - Diaminopimelate epimerase (EC 5.1.1.7), at 213,414 to 214,289
GFF545
Position (kb) 212
213
214 Strain fitness (log2 ratio) -2
-1
0
1 at 211.454 kb on + strand, within GFF542 at 211.622 kb on + strand, within GFF542 at 211.622 kb on + strand, within GFF542 at 211.851 kb on - strand, within GFF542 at 211.851 kb on - strand, within GFF542 at 211.928 kb on + strand, within GFF542 at 211.928 kb on + strand, within GFF542 at 212.291 kb on + strand at 212.291 kb on + strand at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.382 kb on - strand, within GFF543 at 212.382 kb on - strand, within GFF543 at 212.382 kb on - strand, within GFF543 at 212.394 kb on - strand, within GFF543 at 212.552 kb on + strand, within GFF543 at 212.553 kb on - strand, within GFF543 at 212.553 kb on - strand, within GFF543 at 212.553 kb on - strand, within GFF543 at 213.125 kb on + strand, within GFF543 at 213.126 kb on - strand, within GFF543 at 213.126 kb on - strand, within GFF543 at 213.126 kb on - strand, within GFF543 at 213.182 kb on + strand at 213.229 kb on + strand at 213.229 kb on + strand at 213.230 kb on - strand at 213.301 kb on - strand, within GFF544 at 213.323 kb on + strand, within GFF544 at 213.324 kb on - strand, within GFF544
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 211,454 + GFF542 0.46 -0.4 211,622 + GFF542 0.59 +0.8 211,622 + GFF542 0.59 +0.3 211,851 - GFF542 0.77 +0.1 211,851 - GFF542 0.77 -0.3 211,928 + GFF542 0.82 +0.5 211,928 + GFF542 0.82 +0.1 212,291 + -1.3 212,291 + -1.5 212,381 + GFF543 0.16 -2.2 212,381 + GFF543 0.16 +0.3 212,381 + GFF543 0.16 +0.9 212,381 + GFF543 0.16 -0.4 212,381 + GFF543 0.16 -0.2 212,381 + GFF543 0.16 +0.2 212,381 + GFF543 0.16 +0.5 212,381 + GFF543 0.16 +0.4 212,381 + GFF543 0.16 -1.5 212,381 + GFF543 0.16 +0.7 212,381 + GFF543 0.16 -1.3 212,381 + GFF543 0.16 +1.3 212,382 - GFF543 0.16 +0.5 212,382 - GFF543 0.16 -0.3 212,382 - GFF543 0.16 +0.3 212,394 - GFF543 0.17 +0.5 212,552 + GFF543 0.33 -0.2 212,553 - GFF543 0.33 +0.2 212,553 - GFF543 0.33 -0.4 212,553 - GFF543 0.33 +1.4 213,125 + GFF543 0.89 +0.6 213,126 - GFF543 0.89 +0.4 213,126 - GFF543 0.89 +0.8 213,126 - GFF543 0.89 +0.7 213,182 + -1.3 213,229 + -0.0 213,229 + -0.5 213,230 - +0.5 213,301 - GFF544 0.35 -0.4 213,323 + GFF544 0.47 -0.6 213,324 - GFF544 0.48 +0.4
Or see this region's nucleotide sequence