Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5409

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5407 and GFF5408 overlap by 4 nucleotidesGFF5408 and GFF5409 overlap by 26 nucleotidesGFF5409 and GFF5410 are separated by 13 nucleotidesGFF5410 and GFF5411 overlap by 4 nucleotides GFF5407 - Coenzyme PQQ synthesis protein E, at 2,411,246 to 2,412,373 GFF5407 GFF5408 - Bll5686 protein, at 2,412,370 to 2,413,107 GFF5408 GFF5409 - Bll5685 protein, at 2,413,082 to 2,413,693 GFF5409 GFF5410 - Bll5684 protein, at 2,413,707 to 2,414,231 GFF5410 GFF5411 - hypothetical protein, at 2,414,228 to 2,414,917 GFF5411 Position (kb) 2413 2414Strain fitness (log2 ratio) -1 0 1 2at 2413.562 kb on + strand, within GFF5409at 2413.848 kb on + strand, within GFF5410at 2413.849 kb on - strand, within GFF5410at 2413.980 kb on + strand, within GFF5410at 2413.980 kb on + strand, within GFF5410at 2413.981 kb on - strand, within GFF5410at 2413.981 kb on - strand, within GFF5410at 2414.047 kb on - strand, within GFF5410

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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2,413,562 + GFF5409 0.78 +0.1
2,413,848 + GFF5410 0.27 -0.2
2,413,849 - GFF5410 0.27 +0.7
2,413,980 + GFF5410 0.52 -0.2
2,413,980 + GFF5410 0.52 +0.2
2,413,981 - GFF5410 0.52 -1.4
2,413,981 - GFF5410 0.52 -0.2
2,414,047 - GFF5410 0.65 +2.2

Or see this region's nucleotide sequence