Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF520 and GFF521 are separated by 1 nucleotides GFF521 and GFF522 are separated by 24 nucleotides GFF522 and GFF523 are separated by 136 nucleotides
GFF520 - Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4), at 188,134 to 188,889
GFF520
GFF521 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 188,891 to 189,562
GFF521
GFF522 - Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4), at 189,587 to 190,324
GFF522
GFF523 - Dihydroorotase (EC 3.5.2.3), at 190,461 to 191,507
GFF523
Position (kb) 189
190
191 Strain fitness (log2 ratio) -1
0
1 at 188.597 kb on - strand, within GFF520 at 188.599 kb on + strand, within GFF520 at 188.600 kb on - strand, within GFF520 at 188.768 kb on - strand, within GFF520 at 188.768 kb on - strand, within GFF520 at 188.789 kb on - strand, within GFF520 at 188.849 kb on + strand at 188.919 kb on - strand at 189.075 kb on - strand, within GFF521 at 189.075 kb on - strand, within GFF521 at 189.290 kb on + strand, within GFF521 at 189.291 kb on - strand, within GFF521 at 189.395 kb on + strand, within GFF521 at 189.506 kb on + strand at 189.506 kb on + strand at 189.506 kb on + strand at 189.507 kb on - strand at 189.507 kb on - strand at 189.555 kb on + strand at 190.322 kb on + strand at 190.322 kb on + strand at 190.481 kb on + strand at 190.481 kb on + strand at 190.481 kb on + strand at 190.701 kb on + strand, within GFF523 at 190.701 kb on + strand, within GFF523 at 190.702 kb on - strand, within GFF523 at 190.830 kb on + strand, within GFF523 at 191.019 kb on + strand, within GFF523 at 191.077 kb on - strand, within GFF523 at 191.118 kb on + strand, within GFF523 at 191.119 kb on - strand, within GFF523 at 191.122 kb on - strand, within GFF523 at 191.295 kb on + strand, within GFF523 at 191.295 kb on + strand, within GFF523 at 191.295 kb on + strand, within GFF523 at 191.296 kb on - strand, within GFF523 at 191.296 kb on - strand, within GFF523 at 191.296 kb on - strand, within GFF523
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 188,597 - GFF520 0.61 -0.2 188,599 + GFF520 0.62 +0.2 188,600 - GFF520 0.62 -0.2 188,768 - GFF520 0.84 -0.9 188,768 - GFF520 0.84 +0.3 188,789 - GFF520 0.87 +0.4 188,849 + +0.3 188,919 - +0.6 189,075 - GFF521 0.27 +0.1 189,075 - GFF521 0.27 +1.0 189,290 + GFF521 0.59 -0.6 189,291 - GFF521 0.60 +0.9 189,395 + GFF521 0.75 -0.3 189,506 + -0.2 189,506 + -0.1 189,506 + +0.3 189,507 - +0.9 189,507 - +0.7 189,555 + +1.5 190,322 + -0.2 190,322 + +0.5 190,481 + +0.2 190,481 + -1.1 190,481 + -1.7 190,701 + GFF523 0.23 -0.9 190,701 + GFF523 0.23 -0.6 190,702 - GFF523 0.23 +0.2 190,830 + GFF523 0.35 +0.2 191,019 + GFF523 0.53 -1.6 191,077 - GFF523 0.59 -0.2 191,118 + GFF523 0.63 -0.5 191,119 - GFF523 0.63 +0.3 191,122 - GFF523 0.63 -0.8 191,295 + GFF523 0.80 +1.0 191,295 + GFF523 0.80 -0.0 191,295 + GFF523 0.80 -0.6 191,296 - GFF523 0.80 +0.1 191,296 - GFF523 0.80 -0.8 191,296 - GFF523 0.80 -1.5
Or see this region's nucleotide sequence