Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4972

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,989,040	+		GFF4970	0.46	+0.1
1,989,041	-		GFF4970	0.46	+0.2
1,989,041	-		GFF4970	0.46	-0.8
1,989,041	-		GFF4970	0.46	+0.6
1,989,595	+		GFF4971	0.18	-0.4
1,989,596	+		GFF4971	0.18	-2.4
1,989,596	-		GFF4971	0.18	-1.7
1,989,596	-		GFF4971	0.18	-0.0
1,989,596	-		GFF4971	0.18	+0.2
1,989,937	-				-1.2
1,990,259	+		GFF4972	0.28	+1.0
1,990,299	+		GFF4972	0.32	-0.2
1,990,299	+		GFF4972	0.32	+0.5
1,990,493	+		GFF4972	0.49	+0.2
1,990,831	-		GFF4972	0.79	+0.0
1,990,904	+		GFF4972	0.86	-1.2
1,990,905	-		GFF4972	0.86	-1.3
1,990,905	-		GFF4972	0.86	+1.4
1,990,905	-		GFF4972	0.86	+0.6
1,991,949	-		GFF4973	0.57	+1.2
1,991,949	-		GFF4973	0.57	+0.0