Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4957 and GFF4958 are separated by 58 nucleotides GFF4958 and GFF4959 are separated by 16 nucleotides GFF4959 and GFF4960 are separated by 12 nucleotides GFF4960 and GFF4961 are separated by 73 nucleotides GFF4961 and GFF4962 are separated by 216 nucleotides
GFF4957 - Chaperone protein HscB, at 1,975,673 to 1,976,197
GFF4957
GFF4958 - Iron binding protein IscA for iron-sulfur cluster assembly, at 1,976,256 to 1,976,579
GFF4958
GFF4959 - Iron-sulfur cluster assembly scaffold protein IscU, at 1,976,596 to 1,976,982
GFF4959
GFF4960 - Cysteine desulfurase (EC 2.8.1.7), IscS subfamily, at 1,976,995 to 1,978,212
GFF4960
GFF4961 - Iron-sulfur cluster regulator IscR, at 1,978,286 to 1,978,822
GFF4961
GFF4962 - Excinuclease ABC subunit B, at 1,979,039 to 1,981,159
GFF4962
Position (kb) 1976
1977
1978
1979 Strain fitness (log2 ratio) -2
-1
0
1 at 1978.188 kb on - strand at 1978.928 kb on + strand at 1978.929 kb on - strand at 1978.961 kb on - strand at 1978.962 kb on + strand at 1978.963 kb on - strand at 1979.002 kb on - strand at 1979.002 kb on - strand at 1979.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 1,978,188 - -1.0 1,978,928 + -0.9 1,978,929 - -0.2 1,978,961 - -1.9 1,978,962 + +0.6 1,978,963 - +0.0 1,979,002 - +0.1 1,979,002 - -0.3 1,979,002 - -0.7
Or see this region's nucleotide sequence