Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4870

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,876,070	+				+0.6
1,876,070	+				-0.0
1,876,070	+				+0.3
1,876,070	+				-0.1
1,876,070	+				+0.3
1,876,071	-				+0.5
1,876,071	-				+0.2
1,876,071	-				-0.5
1,876,951	+				+1.2
1,876,952	-				+0.6
1,877,101	+		GFF4870	0.18	-0.5
1,877,101	+		GFF4870	0.18	-2.1
1,877,102	-		GFF4870	0.19	-0.5
1,877,366	-		GFF4870	0.45	+0.2
1,877,366	-		GFF4870	0.45	+0.2
1,877,366	-		GFF4870	0.45	-1.6
1,877,517	+		GFF4870	0.60	-0.1
1,877,517	+		GFF4870	0.60	+0.2
1,877,518	-		GFF4870	0.60	-0.4
1,877,518	-		GFF4870	0.60	-0.6
1,877,518	-		GFF4870	0.60	-0.3
1,877,614	+		GFF4870	0.69	-0.9
1,877,614	+		GFF4870	0.69	-0.3
1,877,776	+		GFF4870	0.85	+0.1
1,877,776	+		GFF4870	0.85	+0.1
1,877,777	-		GFF4870	0.85	-0.0
1,877,952	+				-0.5
1,877,953	-				+0.2
1,877,953	-				-0.2
1,877,953	-				-0.4
1,877,953	-				+0.3
1,877,953	-				+0.3
1,877,953	-				+0.7
1,877,953	-				+0.1
1,877,973	+				+0.5
1,878,752	+				-1.4
1,878,752	+				+0.3
1,878,752	+				+0.4
1,878,753	-				-0.6
1,878,803	+				+0.3
1,878,804	-				-0.3
1,878,892	+				-1.4
1,878,892	+				-0.4
1,878,893	-				+0.5