Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4794

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,804,911	+		GFF4793	0.26	+0.1
1,804,911	+		GFF4793	0.26	-0.7
1,804,912	-		GFF4793	0.26	-0.2
1,805,076	+		GFF4793	0.44	-1.2
1,805,076	+		GFF4793	0.44	+0.1
1,805,077	-		GFF4793	0.44	+0.4
1,805,077	-		GFF4793	0.44	+0.2
1,805,290	-		GFF4793	0.67	-0.4
1,805,344	-		GFF4793	0.72	+0.6
1,805,682	+				-0.3
1,805,682	+				+0.4
1,805,763	+				-0.0
1,805,763	+				+0.1
1,805,764	-				-0.0
1,806,072	+		GFF4794	0.21	+1.4
1,806,072	+		GFF4794	0.21	+0.4
1,806,072	+		GFF4794	0.21	+0.7
1,806,073	-		GFF4794	0.21	+0.4
1,806,073	-		GFF4794	0.21	-0.0
1,806,073	-		GFF4794	0.21	-0.3
1,806,126	+		GFF4794	0.24	-0.1
1,806,513	-		GFF4794	0.47	-0.2
1,807,323	+				-0.1
1,807,323	+				+0.1
1,807,324	-				+0.3
1,807,479	+				-0.2
1,807,480	-				+0.1
1,807,746	+		GFF4795	0.25	-1.8
1,807,842	+		GFF4795	0.38	+1.3
1,807,843	-		GFF4795	0.38	-0.4
1,808,143	-		GFF4795	0.79	+0.1
1,808,277	+				-0.1
1,808,365	-				+0.2
1,808,365	-				+0.5
1,808,365	-				+1.4