Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF476 and GFF477 are separated by 106 nucleotides GFF477 and GFF478 are separated by 96 nucleotides GFF478 and GFF479 overlap by 4 nucleotides
GFF476 - Allophanate hydrolase (EC 3.5.1.54), at 139,485 to 140,858
GFF476
GFF477 - 1,2-diacylglycerol 3-glucosyltransferase (EC 2.4.1.157); diglucosyldiacylglycerol synthase (LTA membrane anchor synthesis); putative, at 140,965 to 142,137
GFF477
GFF478 - Acyclic terpenes utilization regulator AtuR, TetR family, at 142,234 to 142,920
GFF478
GFF479 - Citronellol and citronellal dehydrogenase, at 142,917 to 143,816
GFF479
Position (kb) 140
141
142
143 Strain fitness (log2 ratio) -2
-1
0
1 at 140.485 kb on + strand, within GFF476 at 140.485 kb on + strand, within GFF476 at 140.486 kb on - strand, within GFF476 at 140.486 kb on - strand, within GFF476 at 140.486 kb on - strand, within GFF476 at 140.663 kb on + strand, within GFF476 at 140.986 kb on + strand at 140.986 kb on + strand at 141.148 kb on + strand, within GFF477 at 141.901 kb on + strand, within GFF477 at 142.448 kb on - strand, within GFF478 at 142.642 kb on + strand, within GFF478 at 142.702 kb on + strand, within GFF478
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 140,485 + GFF476 0.73 -1.9 140,485 + GFF476 0.73 -0.3 140,486 - GFF476 0.73 -0.3 140,486 - GFF476 0.73 +0.0 140,486 - GFF476 0.73 -0.5 140,663 + GFF476 0.86 +0.4 140,986 + -0.3 140,986 + -1.9 141,148 + GFF477 0.16 -2.4 141,901 + GFF477 0.80 +0.8 142,448 - GFF478 0.31 +0.6 142,642 + GFF478 0.59 +0.1 142,702 + GFF478 0.68 +0.9
Or see this region's nucleotide sequence