Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF47

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF45 and GFF46 overlap by 4 nucleotidesGFF46 and GFF47 overlap by 4 nucleotidesGFF47 and GFF48 overlap by 4 nucleotides GFF45 - Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-), at 45,528 to 46,088 GFF45 GFF46 - Methyltransferase, at 46,085 to 47,038 GFF46 GFF47 - Glycosyltransferase, at 47,035 to 48,201 GFF47 GFF48 - Glycosyltransferase, at 48,198 to 49,397 GFF48 Position (kb) 47 48 49Strain fitness (log2 ratio) -1 0 1at 46.374 kb on + strand, within GFF46at 46.878 kb on + strand, within GFF46at 48.008 kb on + strand, within GFF47at 48.275 kb on - strandat 48.439 kb on + strand, within GFF48at 48.440 kb on - strand, within GFF48at 48.581 kb on - strand, within GFF48at 48.614 kb on - strand, within GFF48at 48.728 kb on - strand, within GFF48at 48.766 kb on + strand, within GFF48at 48.766 kb on + strand, within GFF48at 48.767 kb on - strand, within GFF48at 48.889 kb on + strand, within GFF48

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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46,374 + GFF46 0.30 -1.4
46,878 + GFF46 0.83 -0.7
48,008 + GFF47 0.83 +0.7
48,275 - +1.0
48,439 + GFF48 0.20 +0.8
48,440 - GFF48 0.20 +0.7
48,581 - GFF48 0.32 +0.0
48,614 - GFF48 0.35 -1.2
48,728 - GFF48 0.44 +0.7
48,766 + GFF48 0.47 +0.4
48,766 + GFF48 0.47 +0.4
48,767 - GFF48 0.47 +0.2
48,889 + GFF48 0.58 -0.1

Or see this region's nucleotide sequence