Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4656

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,606,463	+				+0.5
1,606,496	+				-0.1
1,606,496	+				-0.8
1,606,496	+				+0.6
1,606,497	-				+1.1
1,606,497	-				+0.1
1,606,514	+				-0.0
1,606,514	+				+1.0
1,606,820	+		GFF4655	0.36	-0.3
1,606,820	+		GFF4655	0.36	+0.1
1,606,820	+		GFF4655	0.36	+0.3
1,606,820	+		GFF4655	0.36	+2.1
1,606,820	+		GFF4655	0.36	-0.3
1,606,820	+		GFF4655	0.36	+0.7
1,606,821	-		GFF4655	0.36	+0.2
1,606,843	+		GFF4655	0.38	-0.8
1,606,843	+		GFF4655	0.38	+0.0
1,606,843	+		GFF4655	0.38	+0.4
1,606,893	-		GFF4655	0.44	-0.4
1,606,893	-		GFF4655	0.44	-0.5
1,607,090	+		GFF4655	0.65	+0.7
1,607,090	+		GFF4655	0.65	-0.1
1,607,090	+		GFF4655	0.65	-0.4
1,607,090	+		GFF4655	0.65	+0.1
1,607,091	-		GFF4655	0.65	-0.3
1,607,117	+		GFF4655	0.68	+0.0
1,607,118	-		GFF4655	0.68	+0.9
1,607,118	-		GFF4655	0.68	-0.1
1,607,276	+		GFF4655	0.85	+1.0
1,607,277	-		GFF4655	0.85	-0.5
1,608,210	+		GFF4656	0.69	+0.4
1,608,211	-		GFF4656	0.70	+0.4
1,608,211	-		GFF4656	0.70	+0.8
1,608,211	-		GFF4656	0.70	+2.4
1,608,211	-		GFF4656	0.70	+0.3
1,608,318	+		GFF4656	0.79	+0.0
1,608,540	+				+0.3
1,608,540	+				-1.6
1,608,540	+				-0.8
1,608,540	+				+1.0
1,608,540	+				+0.1
1,608,541	-				-0.9
1,608,541	-				-0.8
1,608,584	+				+0.3
1,608,584	+				-0.4
1,608,584	+				-0.1
1,608,584	+				+0.1
1,608,586	+				-0.6
1,608,586	+				-0.2
1,608,587	-				+0.3
1,608,587	-				+0.1
1,608,587	-				+1.2
1,608,610	-				+0.2
1,608,785	-		GFF4657	0.17	+1.1
1,608,929	-		GFF4657	0.31	+0.2
1,609,336	+		GFF4657	0.70	-0.4
1,609,337	-		GFF4657	0.70	+0.4
1,609,486	+		GFF4657	0.85	-0.1
1,609,486	+		GFF4657	0.85	+1.1
1,609,486	+		GFF4657	0.85	+0.3
1,609,486	+		GFF4657	0.85	-0.5
1,609,487	-		GFF4657	0.85	+1.3
1,609,534	+		GFF4657	0.89	+0.1
1,609,535	-		GFF4657	0.89	+0.6