Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4591

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,535,574	+		GFF4589	0.84	+0.2
1,535,574	+		GFF4589	0.84	-1.2
1,535,574	+		GFF4589	0.84	+0.0
1,535,575	-		GFF4589	0.84	-1.6
1,535,748	+				-0.4
1,535,749	-				-0.7
1,535,749	-				-1.9
1,535,807	+				+1.9
1,535,808	-				+1.9
1,536,129	-		GFF4590	0.44	-0.5
1,536,134	+		GFF4590	0.44	+0.3
1,536,134	+		GFF4590	0.44	+0.4
1,536,134	+		GFF4590	0.44	-0.2
1,536,134	+		GFF4590	0.44	-0.5
1,536,135	-		GFF4590	0.45	+0.0
1,536,248	+		GFF4590	0.59	-0.8
1,536,248	+		GFF4590	0.59	-0.6
1,536,527	+				+1.2
1,536,598	+				+0.5
1,536,778	+		GFF4591	0.30	+0.6
1,536,779	-		GFF4591	0.30	+0.3
1,536,779	-		GFF4591	0.30	-0.4
1,536,805	+		GFF4591	0.34	+1.1
1,536,913	+		GFF4591	0.49	+0.2
1,536,913	+		GFF4591	0.49	-0.1
1,536,913	+		GFF4591	0.49	+0.2
1,536,913	+		GFF4591	0.49	-0.3
1,536,913	+		GFF4591	0.49	+0.3
1,536,913	+		GFF4591	0.49	-1.4
1,536,913	+		GFF4591	0.49	+0.3
1,536,914	-		GFF4591	0.49	+0.8
1,536,914	-		GFF4591	0.49	-0.3
1,536,914	-		GFF4591	0.49	-0.4
1,536,914	-		GFF4591	0.49	-0.1
1,537,238	-				-0.6
1,537,539	-				+0.5
1,537,539	-				-0.3
1,537,539	-				-0.2
1,537,859	+		GFF4592	0.16	-0.6
1,538,183	+		GFF4592	0.31	-0.3
1,538,183	+		GFF4592	0.31	-1.3
1,538,183	+		GFF4592	0.31	-0.9
1,538,183	+		GFF4592	0.31	-0.8
1,538,184	-		GFF4592	0.31	-2.2