Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4383

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,312,040	+				+0.2
1,312,061	+				-0.2
1,312,062	-				-0.7
1,312,096	-				+1.0
1,312,115	+				-0.2
1,312,116	-				+0.8
1,312,116	-				-0.1
1,312,127	-				-0.6
1,312,127	-				+0.2
1,312,127	-				+0.3
1,312,156	+				-1.3
1,312,156	+				+0.2
1,312,185	+				-0.3
1,312,185	+				+0.5
1,312,185	+				+0.2
1,312,185	+				+0.1
1,312,185	+				-0.1
1,312,186	-				+1.7
1,312,240	-				-0.4
1,312,251	-				+0.1
1,312,342	+				+0.0
1,312,343	-				+0.1
1,312,343	-				+0.1
1,312,394	+				+0.1
1,312,395	-				-0.1
1,312,395	-				+0.1
1,312,460	+				+0.5
1,312,460	+				+0.2
1,312,461	-				+0.3
1,312,461	-				+0.3
1,312,530	+				-0.1
1,312,530	+				-0.5
1,312,530	+				-1.2
1,312,530	+				-0.4
1,312,530	+				+0.3
1,312,531	-				+0.2
1,312,533	+				-0.0
1,312,533	+				-1.2
1,312,533	+				+1.7
1,312,572	+				+1.0
1,312,573	-				-1.5
1,312,607	+				+0.8
1,312,801	+				+0.5
1,312,801	+				-0.0
1,312,811	+				+0.0
1,312,811	+				-0.3
1,312,812	-				-2.2
1,312,812	-				+1.0
1,312,834	+				+0.7
1,313,126	+		GFF4383	0.39	-0.6
1,313,127	-		GFF4383	0.39	+0.0
1,313,300	-		GFF4383	0.88	+0.1
1,313,300	-		GFF4383	0.88	-0.2
1,313,300	-		GFF4383	0.88	-0.9
1,313,300	-		GFF4383	0.88	-0.4
1,313,341	+				+2.0
1,313,341	+				-1.4
1,313,341	+				-1.0
1,313,341	+				+0.1
1,313,341	+				-0.1
1,313,341	+				-0.0
1,313,342	-				-0.3
1,313,342	-				-2.2
1,313,342	-				+0.2
1,313,392	+				+0.6
1,313,425	+		GFF4384	0.20	-0.2
1,313,425	+		GFF4384	0.20	+0.3
1,313,426	-		GFF4384	0.20	-0.4
1,313,914	+				-0.6
1,313,914	+				+0.3
1,313,930	+				+0.5
1,313,931	-				-0.1
1,313,939	+				+0.9
1,313,940	-				+0.5