Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4266

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,190,950	+				+0.6
1,190,950	+				+2.1
1,190,951	-				+0.6
1,190,951	-				+0.1
1,191,028	+		GFF4265	0.13	+0.0
1,191,029	-		GFF4265	0.13	+0.2
1,191,029	-		GFF4265	0.13	+0.7
1,191,235	+		GFF4265	0.38	-0.2
1,191,235	+		GFF4265	0.38	+0.0
1,191,235	+		GFF4265	0.38	-1.2
1,191,790	-				+0.3
1,191,857	+				-0.7
1,191,858	+				-0.3
1,191,858	-				+0.4
1,191,858	-				+0.7
1,192,031	-		GFF4266	0.26	+0.1
1,192,031	-		GFF4266	0.26	-0.9
1,192,031	-		GFF4266	0.26	+1.0
1,192,072	+		GFF4266	0.32	+0.0
1,192,072	+		GFF4266	0.32	+0.7
1,192,072	+		GFF4266	0.32	-0.3
1,192,073	-		GFF4266	0.32	-0.2
1,192,168	+		GFF4266	0.48	+1.4
1,192,182	-		GFF4266	0.50	+0.3
1,192,223	+		GFF4266	0.56	+0.7
1,192,604	+				-0.2
1,192,685	+				-0.1
1,192,685	+				+0.2
1,192,685	+				+0.1
1,192,686	-				+0.0
1,192,686	-				+0.3
1,192,686	-				-0.7
1,192,686	-				+0.3
1,192,686	-				+0.3
1,192,725	+		GFF4267	0.10	+0.3
1,192,892	+		GFF4267	0.19	-0.4
1,192,892	+		GFF4267	0.19	-0.1
1,192,893	-		GFF4267	0.19	+0.2
1,193,012	+		GFF4267	0.24	-0.9
1,193,012	+		GFF4267	0.24	+0.4
1,193,013	-		GFF4267	0.24	-0.2
1,193,013	-		GFF4267	0.24	+0.9
1,193,087	+		GFF4267	0.28	-1.2
1,193,087	+		GFF4267	0.28	+0.7
1,193,088	-		GFF4267	0.28	+0.3
1,193,088	-		GFF4267	0.28	-0.2
1,193,088	-		GFF4267	0.28	-0.1
1,193,108	+		GFF4267	0.29	+0.3
1,193,109	-		GFF4267	0.29	-0.6
1,193,156	+		GFF4267	0.31	-0.4
1,193,345	+		GFF4267	0.40	-0.7
1,193,346	-		GFF4267	0.41	+0.9
1,193,346	-		GFF4267	0.41	+0.3
1,193,363	+		GFF4267	0.41	+0.4
1,193,364	-		GFF4267	0.41	+1.8
1,193,364	-		GFF4267	0.41	+0.3
1,193,364	-		GFF4267	0.41	+1.1
1,193,364	-		GFF4267	0.41	+0.0