Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4140

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,050,960	+		GFF4139	0.45	-0.2
1,050,960	+		GFF4139	0.45	+1.2
1,050,960	+		GFF4139	0.45	+0.6
1,050,960	+		GFF4139	0.45	+0.5
1,050,960	+		GFF4139	0.45	-0.3
1,050,961	-		GFF4139	0.45	+0.3
1,050,961	-		GFF4139	0.45	+0.9
1,050,961	-		GFF4139	0.45	+0.6
1,050,961	-		GFF4139	0.45	-0.3
1,050,961	-		GFF4139	0.45	-1.6
1,051,023	+		GFF4139	0.49	-0.1
1,051,024	-		GFF4139	0.49	+0.2
1,051,227	+		GFF4139	0.64	-0.1
1,051,329	+		GFF4139	0.71	-0.4
1,051,329	+		GFF4139	0.71	+0.3
1,051,329	+		GFF4139	0.71	-0.4
1,051,330	-		GFF4139	0.71	+0.3
1,051,330	-		GFF4139	0.71	+0.1
1,052,198	-		GFF4141	0.62	+0.3
1,052,325	+				-0.3
1,052,325	+				+0.1
1,052,326	-				-0.1
1,052,407	-		GFF4142	0.20	+0.8
1,052,407	-		GFF4142	0.20	+0.0
1,052,808	+		GFF4142	0.76	+0.4
1,052,809	-		GFF4142	0.76	+1.3
1,052,809	-		GFF4142	0.76	+0.1
1,052,809	-		GFF4142	0.76	-0.1
1,052,984	+				+0.1
1,053,012	+				-0.1
1,053,013	-				+0.5
1,053,020	-				+0.7