Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4057

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4056 and GFF4057 overlap by 4 nucleotidesGFF4057 and GFF4058 overlap by 4 nucleotides GFF4056 - Flagellar motor switch protein FliG, at 974,599 to 975,624 GFF4056 GFF4057 - Flagellar assembly protein FliH, at 975,621 to 976,331 GFF4057 GFF4058 - Flagellum-specific ATP synthase FliI, at 976,328 to 977,635 GFF4058 Position (kb) 975 976 977Strain fitness (log2 ratio) -2 -1 0 1 2 3at 974.857 kb on + strand, within GFF4056at 974.858 kb on - strand, within GFF4056at 974.858 kb on - strand, within GFF4056at 974.923 kb on + strand, within GFF4056at 975.173 kb on - strand, within GFF4056at 975.173 kb on - strand, within GFF4056at 975.325 kb on + strand, within GFF4056at 975.325 kb on + strand, within GFF4056at 975.630 kb on + strandat 975.766 kb on - strand, within GFF4057at 975.766 kb on - strand, within GFF4057at 975.879 kb on + strand, within GFF4057at 975.879 kb on + strand, within GFF4057at 975.879 kb on + strand, within GFF4057at 975.880 kb on - strand, within GFF4057at 977.052 kb on - strand, within GFF4058at 977.246 kb on + strand, within GFF4058at 977.246 kb on + strand, within GFF4058at 977.247 kb on - strand, within GFF4058at 977.247 kb on - strand, within GFF4058

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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974,857 + GFF4056 0.25 +0.8
974,858 - GFF4056 0.25 -2.0
974,858 - GFF4056 0.25 -0.2
974,923 + GFF4056 0.32 +1.4
975,173 - GFF4056 0.56 +0.9
975,173 - GFF4056 0.56 +0.1
975,325 + GFF4056 0.71 -0.6
975,325 + GFF4056 0.71 +0.4
975,630 + +0.6
975,766 - GFF4057 0.20 +1.0
975,766 - GFF4057 0.20 +1.7
975,879 + GFF4057 0.36 +0.2
975,879 + GFF4057 0.36 +3.0
975,879 + GFF4057 0.36 -0.2
975,880 - GFF4057 0.36 -0.2
977,052 - GFF4058 0.55 +0.6
977,246 + GFF4058 0.70 +0.1
977,246 + GFF4058 0.70 -0.2
977,247 - GFF4058 0.70 +0.1
977,247 - GFF4058 0.70 +0.2

Or see this region's nucleotide sequence