Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3922 and GFF3923 are separated by 126 nucleotides GFF3923 and GFF3924 are separated by 221 nucleotides GFF3924 and GFF3925 are separated by 132 nucleotides
GFF3922 - Acetate permease ActP (cation/acetate symporter), at 835,880 to 837,943
GFF3922
GFF3923 - Permeases of the major facilitator superfamily, at 838,070 to 839,752
GFF3923
GFF3924 - Probable proline-rich protein, at 839,974 to 840,438
GFF3924
GFF3925 - SSU ribosomal protein S6p, at 840,571 to 840,957
GFF3925
Position (kb) 838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.116 kb on + strand, within GFF3922 at 837.116 kb on + strand, within GFF3922 at 837.116 kb on + strand, within GFF3922 at 837.117 kb on - strand, within GFF3922 at 837.117 kb on - strand, within GFF3922 at 837.117 kb on - strand, within GFF3922 at 837.185 kb on + strand, within GFF3922 at 837.186 kb on - strand, within GFF3922 at 837.186 kb on - strand, within GFF3922 at 837.221 kb on + strand, within GFF3922 at 837.221 kb on + strand, within GFF3922 at 837.222 kb on - strand, within GFF3922 at 837.222 kb on - strand, within GFF3922 at 837.222 kb on - strand, within GFF3922 at 837.413 kb on + strand, within GFF3922 at 837.413 kb on + strand, within GFF3922 at 837.413 kb on + strand, within GFF3922 at 837.413 kb on + strand, within GFF3922 at 837.414 kb on - strand, within GFF3922 at 837.414 kb on - strand, within GFF3922 at 837.414 kb on - strand, within GFF3922 at 837.515 kb on + strand, within GFF3922 at 837.515 kb on + strand, within GFF3922 at 837.515 kb on + strand, within GFF3922 at 837.515 kb on + strand, within GFF3922 at 837.516 kb on - strand, within GFF3922 at 837.516 kb on - strand, within GFF3922 at 837.516 kb on - strand, within GFF3922 at 837.516 kb on - strand, within GFF3922 at 837.516 kb on - strand, within GFF3922 at 837.773 kb on + strand at 837.773 kb on + strand at 837.773 kb on + strand at 837.773 kb on + strand at 837.773 kb on + strand at 837.773 kb on + strand at 837.773 kb on + strand at 837.773 kb on + strand at 837.774 kb on - strand at 837.774 kb on - strand at 837.774 kb on - strand at 837.950 kb on - strand at 837.950 kb on - strand at 838.014 kb on + strand at 838.014 kb on + strand at 838.015 kb on - strand at 838.048 kb on + strand at 838.049 kb on - strand at 838.049 kb on - strand at 838.053 kb on + strand at 838.054 kb on - strand at 838.054 kb on - strand at 838.054 kb on - strand at 838.054 kb on - strand at 838.143 kb on + strand at 838.144 kb on - strand at 838.163 kb on + strand at 838.163 kb on + strand at 838.164 kb on - strand at 838.172 kb on + strand at 838.172 kb on + strand at 838.173 kb on - strand at 838.173 kb on - strand at 838.178 kb on + strand at 838.178 kb on + strand at 838.179 kb on - strand at 838.241 kb on + strand, within GFF3923 at 838.241 kb on + strand, within GFF3923 at 838.242 kb on - strand, within GFF3923 at 838.337 kb on + strand, within GFF3923 at 838.338 kb on - strand, within GFF3923 at 838.338 kb on - strand, within GFF3923 at 838.338 kb on - strand, within GFF3923 at 838.403 kb on + strand, within GFF3923 at 838.403 kb on + strand, within GFF3923 at 838.403 kb on + strand, within GFF3923 at 838.403 kb on + strand, within GFF3923 at 838.403 kb on + strand, within GFF3923 at 838.404 kb on - strand, within GFF3923 at 838.404 kb on - strand, within GFF3923 at 838.482 kb on - strand, within GFF3923 at 838.499 kb on + strand, within GFF3923 at 838.499 kb on + strand, within GFF3923 at 838.499 kb on + strand, within GFF3923 at 838.499 kb on + strand, within GFF3923 at 838.499 kb on + strand, within GFF3923 at 838.499 kb on + strand, within GFF3923 at 838.500 kb on - strand, within GFF3923 at 838.500 kb on - strand, within GFF3923 at 838.500 kb on - strand, within GFF3923 at 838.500 kb on - strand, within GFF3923 at 838.500 kb on - strand, within GFF3923 at 838.500 kb on - strand, within GFF3923 at 838.538 kb on + strand, within GFF3923 at 838.539 kb on - strand, within GFF3923 at 838.857 kb on - strand, within GFF3923 at 838.857 kb on - strand, within GFF3923 at 838.872 kb on - strand, within GFF3923 at 839.046 kb on - strand, within GFF3923 at 839.046 kb on - strand, within GFF3923 at 839.046 kb on - strand, within GFF3923 at 839.075 kb on + strand, within GFF3923 at 839.076 kb on - strand, within GFF3923 at 839.076 kb on - strand, within GFF3923 at 839.076 kb on - strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.229 kb on - strand, within GFF3923 at 839.238 kb on - strand, within GFF3923 at 839.498 kb on + strand, within GFF3923 at 839.499 kb on - strand, within GFF3923 at 839.499 kb on - strand, within GFF3923 at 839.499 kb on - strand, within GFF3923 at 839.549 kb on + strand, within GFF3923 at 839.549 kb on + strand, within GFF3923 at 839.549 kb on + strand, within GFF3923 at 839.550 kb on - strand, within GFF3923 at 839.571 kb on - strand, within GFF3923 at 839.571 kb on - strand, within GFF3923 at 839.651 kb on + strand at 839.651 kb on + strand at 839.651 kb on + strand at 839.651 kb on + strand at 839.652 kb on - strand at 839.652 kb on - strand at 839.652 kb on - strand at 839.652 kb on - strand at 839.738 kb on + strand at 839.738 kb on + strand at 839.738 kb on + strand at 839.739 kb on - strand at 839.739 kb on - strand at 839.739 kb on - strand at 839.739 kb on - strand at 839.739 kb on - strand at 839.739 kb on - strand at 839.845 kb on + strand at 839.847 kb on + strand at 839.848 kb on - strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 840.265 kb on + strand, within GFF3924 at 840.266 kb on - strand, within GFF3924 at 840.266 kb on - strand, within GFF3924 at 840.346 kb on + strand, within GFF3924 at 840.346 kb on + strand, within GFF3924 at 840.346 kb on + strand, within GFF3924 at 840.346 kb on + strand, within GFF3924 at 840.346 kb on + strand, within GFF3924 at 840.346 kb on + strand, within GFF3924 at 840.346 kb on - strand, within GFF3924 at 840.347 kb on - strand, within GFF3924 at 840.347 kb on - strand, within GFF3924 at 840.347 kb on - strand, within GFF3924 at 840.347 kb on - strand, within GFF3924 at 840.471 kb on + strand at 840.472 kb on - strand at 840.472 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 837,116 + GFF3922 0.60 +0.3 837,116 + GFF3922 0.60 +0.4 837,116 + GFF3922 0.60 -0.5 837,117 - GFF3922 0.60 -0.5 837,117 - GFF3922 0.60 -1.4 837,117 - GFF3922 0.60 +0.8 837,185 + GFF3922 0.63 -0.8 837,186 - GFF3922 0.63 -1.1 837,186 - GFF3922 0.63 -1.4 837,221 + GFF3922 0.65 +0.1 837,221 + GFF3922 0.65 +0.3 837,222 - GFF3922 0.65 +0.2 837,222 - GFF3922 0.65 -0.2 837,222 - GFF3922 0.65 +0.2 837,413 + GFF3922 0.74 -0.8 837,413 + GFF3922 0.74 -0.1 837,413 + GFF3922 0.74 -0.2 837,413 + GFF3922 0.74 +0.9 837,414 - GFF3922 0.74 +1.0 837,414 - GFF3922 0.74 -0.1 837,414 - GFF3922 0.74 -0.3 837,515 + GFF3922 0.79 +0.6 837,515 + GFF3922 0.79 +0.6 837,515 + GFF3922 0.79 -0.8 837,515 + GFF3922 0.79 +0.2 837,516 - GFF3922 0.79 +0.0 837,516 - GFF3922 0.79 -0.3 837,516 - GFF3922 0.79 -0.4 837,516 - GFF3922 0.79 -0.0 837,516 - GFF3922 0.79 -0.1 837,773 + +0.1 837,773 + +0.3 837,773 + +0.0 837,773 + -0.4 837,773 + +0.1 837,773 + +0.4 837,773 + -1.2 837,773 + -0.1 837,774 - -0.6 837,774 - -0.2 837,774 - +0.8 837,950 - +0.1 837,950 - -0.3 838,014 + +1.0 838,014 + +0.7 838,015 - -0.7 838,048 + +0.3 838,049 - +0.5 838,049 - -0.5 838,053 + +0.4 838,054 - +0.9 838,054 - -0.9 838,054 - +0.4 838,054 - +0.8 838,143 + +0.4 838,144 - +0.6 838,163 + -0.2 838,163 + -0.6 838,164 - -0.4 838,172 + -0.4 838,172 + +1.3 838,173 - +0.1 838,173 - -0.7 838,178 + -0.2 838,178 + +0.2 838,179 - +0.3 838,241 + GFF3923 0.10 +0.0 838,241 + GFF3923 0.10 +1.8 838,242 - GFF3923 0.10 -0.7 838,337 + GFF3923 0.16 +0.5 838,338 - GFF3923 0.16 +0.3 838,338 - GFF3923 0.16 +1.4 838,338 - GFF3923 0.16 +1.0 838,403 + GFF3923 0.20 +0.2 838,403 + GFF3923 0.20 -0.0 838,403 + GFF3923 0.20 -0.0 838,403 + GFF3923 0.20 -0.7 838,403 + GFF3923 0.20 +0.2 838,404 - GFF3923 0.20 -0.5 838,404 - GFF3923 0.20 -0.1 838,482 - GFF3923 0.24 -1.1 838,499 + GFF3923 0.25 +0.1 838,499 + GFF3923 0.25 +1.1 838,499 + GFF3923 0.25 +0.2 838,499 + GFF3923 0.25 +1.0 838,499 + GFF3923 0.25 +0.2 838,499 + GFF3923 0.25 +0.6 838,500 - GFF3923 0.26 -0.6 838,500 - GFF3923 0.26 +0.9 838,500 - GFF3923 0.26 -0.2 838,500 - GFF3923 0.26 +0.7 838,500 - GFF3923 0.26 +0.1 838,500 - GFF3923 0.26 -0.6 838,538 + GFF3923 0.28 -0.3 838,539 - GFF3923 0.28 +0.1 838,857 - GFF3923 0.47 +0.1 838,857 - GFF3923 0.47 +0.8 838,872 - GFF3923 0.48 +0.5 839,046 - GFF3923 0.58 -1.8 839,046 - GFF3923 0.58 +0.9 839,046 - GFF3923 0.58 +0.3 839,075 + GFF3923 0.60 -0.8 839,076 - GFF3923 0.60 +1.4 839,076 - GFF3923 0.60 +1.5 839,076 - GFF3923 0.60 +0.6 839,228 + GFF3923 0.69 -0.3 839,228 + GFF3923 0.69 -0.0 839,228 + GFF3923 0.69 +0.2 839,228 + GFF3923 0.69 +0.6 839,228 + GFF3923 0.69 +0.4 839,228 + GFF3923 0.69 -0.2 839,228 + GFF3923 0.69 +1.1 839,228 + GFF3923 0.69 +1.4 839,228 + GFF3923 0.69 +0.5 839,228 + GFF3923 0.69 +0.4 839,229 - GFF3923 0.69 +0.2 839,238 - GFF3923 0.69 +0.8 839,498 + GFF3923 0.85 +0.2 839,499 - GFF3923 0.85 +0.1 839,499 - GFF3923 0.85 +0.4 839,499 - GFF3923 0.85 +0.1 839,549 + GFF3923 0.88 +0.0 839,549 + GFF3923 0.88 -1.4 839,549 + GFF3923 0.88 +0.1 839,550 - GFF3923 0.88 -0.3 839,571 - GFF3923 0.89 -0.1 839,571 - GFF3923 0.89 -0.8 839,651 + +0.2 839,651 + +0.8 839,651 + -0.5 839,651 + +0.1 839,652 - +0.9 839,652 - +0.3 839,652 - +0.0 839,652 - +1.0 839,738 + +0.1 839,738 + +0.2 839,738 + +0.2 839,739 - -0.3 839,739 - +1.1 839,739 - +0.0 839,739 - +0.0 839,739 - +0.8 839,739 - +0.6 839,845 + +1.1 839,847 + +0.1 839,848 - +0.7 839,879 + +0.4 839,879 + +0.6 839,879 + -1.2 839,879 + +0.4 839,879 + -0.3 839,879 + +1.0 839,879 + +0.4 839,879 + +0.9 839,880 - -0.4 839,880 - +0.2 839,880 - +0.7 839,880 - +0.9 839,880 - -1.2 839,880 - -0.0 839,880 - -0.0 839,880 - -0.2 839,880 - +1.4 840,265 + GFF3924 0.63 -0.6 840,266 - GFF3924 0.63 +0.2 840,266 - GFF3924 0.63 +0.6 840,346 + GFF3924 0.80 -1.3 840,346 + GFF3924 0.80 +0.2 840,346 + GFF3924 0.80 +0.3 840,346 + GFF3924 0.80 +2.2 840,346 + GFF3924 0.80 +0.2 840,346 + GFF3924 0.80 -0.0 840,346 - GFF3924 0.80 +0.3 840,347 - GFF3924 0.80 -0.2 840,347 - GFF3924 0.80 -0.6 840,347 - GFF3924 0.80 +1.3 840,347 - GFF3924 0.80 +1.7 840,471 + +0.1 840,472 - +0.5 840,472 - +0.1
Or see this region's nucleotide sequence