Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3901 and GFF3902 overlap by 4 nucleotides GFF3902 and GFF3903 are separated by 8 nucleotides
GFF3901 - Macrolide-specific efflux protein MacA, at 811,223 to 813,148
GFF3901
GFF3902 - Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-), at 813,145 to 815,148
GFF3902
GFF3903 - RND efflux system, outer membrane lipoprotein CmeC, at 815,157 to 816,566
GFF3903
Position (kb) 813
814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 813.298 kb on + strand at 813.398 kb on - strand, within GFF3902 at 813.487 kb on + strand, within GFF3902 at 813.487 kb on + strand, within GFF3902 at 813.488 kb on - strand, within GFF3902 at 813.488 kb on - strand, within GFF3902 at 813.488 kb on - strand, within GFF3902 at 813.542 kb on - strand, within GFF3902 at 814.471 kb on + strand, within GFF3902 at 814.471 kb on + strand, within GFF3902 at 814.472 kb on - strand, within GFF3902 at 814.472 kb on - strand, within GFF3902 at 815.090 kb on - strand at 815.562 kb on + strand, within GFF3903 at 815.562 kb on + strand, within GFF3903 at 815.562 kb on + strand, within GFF3903 at 815.562 kb on + strand, within GFF3903 at 815.563 kb on - strand, within GFF3903 at 815.634 kb on + strand, within GFF3903 at 815.635 kb on - strand, within GFF3903 at 815.635 kb on - strand, within GFF3903 at 815.685 kb on + strand, within GFF3903 at 815.685 kb on + strand, within GFF3903 at 815.686 kb on - strand, within GFF3903 at 815.686 kb on - strand, within GFF3903 at 815.926 kb on - strand, within GFF3903
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 813,298 + -0.1 813,398 - GFF3902 0.13 -0.2 813,487 + GFF3902 0.17 -0.3 813,487 + GFF3902 0.17 -0.3 813,488 - GFF3902 0.17 -0.7 813,488 - GFF3902 0.17 -1.6 813,488 - GFF3902 0.17 -0.1 813,542 - GFF3902 0.20 +0.4 814,471 + GFF3902 0.66 -0.3 814,471 + GFF3902 0.66 -0.5 814,472 - GFF3902 0.66 +0.3 814,472 - GFF3902 0.66 +0.1 815,090 - -0.2 815,562 + GFF3903 0.29 +0.7 815,562 + GFF3903 0.29 -0.8 815,562 + GFF3903 0.29 +0.6 815,562 + GFF3903 0.29 +0.3 815,563 - GFF3903 0.29 -0.1 815,634 + GFF3903 0.34 -2.9 815,635 - GFF3903 0.34 -1.5 815,635 - GFF3903 0.34 +1.2 815,685 + GFF3903 0.37 -0.1 815,685 + GFF3903 0.37 -0.1 815,686 - GFF3903 0.38 -0.1 815,686 - GFF3903 0.38 +0.3 815,926 - GFF3903 0.55 -0.2
Or see this region's nucleotide sequence