Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3876

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3875 and GFF3876 are separated by 11 nucleotidesGFF3876 and GFF3877 are separated by 118 nucleotides GFF3875 - Paraquat-inducible protein B, at 788,963 to 790,000 GFF3875 GFF3876 - protein of unknown function DUF330, at 790,012 to 790,608 GFF3876 GFF3877 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 790,727 to 792,559 GFF3877 Position (kb) 790 791Strain fitness (log2 ratio) -2 -1 0 1 2at 789.059 kb on + strandat 789.059 kb on + strandat 789.060 kb on - strandat 789.060 kb on - strandat 789.060 kb on - strandat 789.089 kb on + strand, within GFF3875at 789.089 kb on + strand, within GFF3875at 789.089 kb on + strand, within GFF3875at 789.089 kb on + strand, within GFF3875at 789.182 kb on + strand, within GFF3875at 789.183 kb on - strand, within GFF3875at 789.183 kb on - strand, within GFF3875at 789.365 kb on + strand, within GFF3875at 789.365 kb on + strand, within GFF3875at 789.365 kb on + strand, within GFF3875at 789.366 kb on - strand, within GFF3875at 789.366 kb on - strand, within GFF3875at 790.687 kb on - strandat 790.979 kb on + strand, within GFF3877at 790.979 kb on + strand, within GFF3877at 790.979 kb on + strand, within GFF3877at 790.979 kb on + strand, within GFF3877at 790.979 kb on + strand, within GFF3877at 790.979 kb on + strand, within GFF3877at 790.980 kb on - strand, within GFF3877at 791.204 kb on + strand, within GFF3877at 791.204 kb on + strand, within GFF3877

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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789,059 + -1.1
789,059 + -0.0
789,060 - -0.7
789,060 - +1.0
789,060 - +1.8
789,089 + GFF3875 0.12 -0.0
789,089 + GFF3875 0.12 -0.1
789,089 + GFF3875 0.12 +0.4
789,089 + GFF3875 0.12 -0.1
789,182 + GFF3875 0.21 +0.2
789,183 - GFF3875 0.21 -1.2
789,183 - GFF3875 0.21 -0.6
789,365 + GFF3875 0.39 -1.4
789,365 + GFF3875 0.39 +0.2
789,365 + GFF3875 0.39 +0.7
789,366 - GFF3875 0.39 +0.4
789,366 - GFF3875 0.39 -2.0
790,687 - +0.2
790,979 + GFF3877 0.14 +0.2
790,979 + GFF3877 0.14 -0.1
790,979 + GFF3877 0.14 +0.6
790,979 + GFF3877 0.14 +0.3
790,979 + GFF3877 0.14 -0.0
790,979 + GFF3877 0.14 +0.9
790,980 - GFF3877 0.14 +0.6
791,204 + GFF3877 0.26 -0.4
791,204 + GFF3877 0.26 -0.1

Or see this region's nucleotide sequence