Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3869 and GFF3870 are separated by 4 nucleotides GFF3870 and GFF3871 are separated by 38 nucleotides GFF3871 and GFF3872 are separated by 83 nucleotides
GFF3869 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 780,676 to 782,313
GFF3869
GFF3870 - Protein tyrosine phosphatase (EC 3.1.3.48), at 782,318 to 783,085
GFF3870
GFF3871 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 783,124 to 784,677
GFF3871
GFF3872 - exported protein, conserved, at 784,761 to 786,809
GFF3872
Position (kb) 783
784
785 Strain fitness (log2 ratio) -1
0
1 at 782.284 kb on + strand at 782.389 kb on - strand at 782.397 kb on - strand, within GFF3870 at 782.517 kb on + strand, within GFF3870 at 782.518 kb on - strand, within GFF3870 at 782.538 kb on + strand, within GFF3870 at 782.539 kb on - strand, within GFF3870 at 782.539 kb on - strand, within GFF3870 at 782.680 kb on - strand, within GFF3870 at 782.712 kb on + strand, within GFF3870 at 782.712 kb on + strand, within GFF3870 at 784.113 kb on - strand, within GFF3871 at 784.484 kb on + strand, within GFF3871 at 784.484 kb on + strand, within GFF3871 at 784.485 kb on - strand, within GFF3871 at 784.485 kb on - strand, within GFF3871 at 784.541 kb on + strand at 784.541 kb on + strand at 784.541 kb on + strand at 784.541 kb on + strand at 784.542 kb on - strand at 784.542 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 782,284 + +1.1 782,389 - -1.1 782,397 - GFF3870 0.10 -0.3 782,517 + GFF3870 0.26 +0.8 782,518 - GFF3870 0.26 -0.2 782,538 + GFF3870 0.29 -0.1 782,539 - GFF3870 0.29 -1.1 782,539 - GFF3870 0.29 +0.1 782,680 - GFF3870 0.47 -0.3 782,712 + GFF3870 0.51 +0.6 782,712 + GFF3870 0.51 +0.8 784,113 - GFF3871 0.64 -0.6 784,484 + GFF3871 0.88 -0.0 784,484 + GFF3871 0.88 -0.3 784,485 - GFF3871 0.88 -0.3 784,485 - GFF3871 0.88 -0.1 784,541 + -0.3 784,541 + +0.4 784,541 + +0.4 784,541 + -0.0 784,542 - +0.6 784,542 - -0.4
Or see this region's nucleotide sequence