Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3859 and GFF3860 are separated by 104 nucleotides GFF3860 and GFF3861 are separated by 17 nucleotides GFF3861 and GFF3862 are separated by 44 nucleotides
GFF3859 - probable ring-cleaving dioxygenase protein, at 771,802 to 772,644
GFF3859
GFF3860 - Transcriptional regulator, IclR family, at 772,749 to 773,540
GFF3860
GFF3861 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 773,558 to 774,064
GFF3861
GFF3862 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 774,109 to 775,098
GFF3862
Position (kb) 773
774
775 Strain fitness (log2 ratio) -2
-1
0
1 at 772.787 kb on - strand at 773.324 kb on - strand, within GFF3860 at 773.362 kb on + strand, within GFF3860 at 773.363 kb on - strand, within GFF3860 at 773.392 kb on + strand, within GFF3860 at 773.392 kb on + strand, within GFF3860 at 773.393 kb on - strand, within GFF3860 at 773.393 kb on - strand, within GFF3860 at 773.633 kb on + strand, within GFF3861 at 773.687 kb on + strand, within GFF3861 at 773.688 kb on - strand, within GFF3861 at 773.688 kb on - strand, within GFF3861 at 774.703 kb on + strand, within GFF3862 at 774.704 kb on - strand, within GFF3862 at 774.820 kb on + strand, within GFF3862 at 774.821 kb on - strand, within GFF3862 at 774.985 kb on + strand, within GFF3862 at 774.985 kb on + strand, within GFF3862 at 775.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 772,787 - +0.0 773,324 - GFF3860 0.73 -0.6 773,362 + GFF3860 0.77 +0.3 773,363 - GFF3860 0.78 +0.1 773,392 + GFF3860 0.81 -0.2 773,392 + GFF3860 0.81 +0.1 773,393 - GFF3860 0.81 +0.2 773,393 - GFF3860 0.81 -2.5 773,633 + GFF3861 0.15 -0.0 773,687 + GFF3861 0.25 +0.5 773,688 - GFF3861 0.26 +0.6 773,688 - GFF3861 0.26 +1.7 774,703 + GFF3862 0.60 +0.3 774,704 - GFF3862 0.60 -0.2 774,820 + GFF3862 0.72 +0.3 774,821 - GFF3862 0.72 +0.3 774,985 + GFF3862 0.88 +0.2 774,985 + GFF3862 0.88 +0.3 775,030 + -0.7
Or see this region's nucleotide sequence