Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3822

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3822 and GFF3823 are separated by 423 nucleotides GFF3822 - RNA polymerase sigma factor RpoD, at 726,935 to 729,151 GFF3822 GFF3823 - DNA primase (EC 2.7.7.-), at 729,575 to 731,575 GFF3823 Position (kb) 726 727 728 729 730Strain fitness (log2 ratio) -1 0 1at 726.384 kb on + strandat 726.936 kb on + strandat 726.937 kb on - strandat 729.482 kb on - strandat 729.482 kb on - strandat 729.482 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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726,384 + +0.7
726,936 + +0.2
726,937 - -0.7
729,482 - -0.0
729,482 - +0.8
729,482 - +0.8

Or see this region's nucleotide sequence