Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3778 and GFF3779 are separated by 96 nucleotides GFF3779 and GFF3780 are separated by 53 nucleotides GFF3780 and GFF3781 are separated by 5 nucleotides
GFF3778 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 676,065 to 677,150
GFF3778
GFF3779 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 677,247 to 678,380
GFF3779
GFF3780 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 678,434 to 678,853
GFF3780
GFF3781 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 678,859 to 679,623
GFF3781
Position (kb) 677
678
679 Strain fitness (log2 ratio) -1
0
1
2 at 676.678 kb on + strand, within GFF3778 at 676.691 kb on - strand, within GFF3778 at 676.705 kb on + strand, within GFF3778 at 676.705 kb on + strand, within GFF3778 at 676.966 kb on + strand, within GFF3778 at 677.047 kb on + strand at 677.048 kb on - strand at 677.048 kb on - strand at 677.094 kb on - strand at 677.094 kb on - strand at 677.094 kb on - strand at 677.246 kb on - strand at 677.470 kb on + strand, within GFF3779 at 677.470 kb on + strand, within GFF3779 at 677.509 kb on + strand, within GFF3779 at 677.510 kb on - strand, within GFF3779 at 677.522 kb on - strand, within GFF3779 at 677.675 kb on - strand, within GFF3779 at 677.675 kb on - strand, within GFF3779 at 678.633 kb on + strand, within GFF3780 at 678.633 kb on + strand, within GFF3780 at 678.633 kb on + strand, within GFF3780 at 679.145 kb on + strand, within GFF3781 at 679.146 kb on - strand, within GFF3781 at 679.146 kb on - strand, within GFF3781 at 679.146 kb on - strand, within GFF3781 at 679.271 kb on + strand, within GFF3781 at 679.272 kb on - strand, within GFF3781
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 676,678 + GFF3778 0.56 +0.2 676,691 - GFF3778 0.58 +1.1 676,705 + GFF3778 0.59 +0.4 676,705 + GFF3778 0.59 +1.7 676,966 + GFF3778 0.83 +0.3 677,047 + +0.5 677,048 - +2.6 677,048 - -1.2 677,094 - -0.1 677,094 - +0.8 677,094 - +1.0 677,246 - +1.0 677,470 + GFF3779 0.20 -0.0 677,470 + GFF3779 0.20 +0.5 677,509 + GFF3779 0.23 +0.8 677,510 - GFF3779 0.23 -0.2 677,522 - GFF3779 0.24 +0.7 677,675 - GFF3779 0.38 +0.2 677,675 - GFF3779 0.38 -0.0 678,633 + GFF3780 0.47 -0.7 678,633 + GFF3780 0.47 -0.7 678,633 + GFF3780 0.47 -1.3 679,145 + GFF3781 0.37 -0.1 679,146 - GFF3781 0.38 -0.1 679,146 - GFF3781 0.38 +0.3 679,146 - GFF3781 0.38 +0.7 679,271 + GFF3781 0.54 -0.7 679,272 - GFF3781 0.54 -0.4
Or see this region's nucleotide sequence