Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3741

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3740 and GFF3741 are separated by 11 nucleotidesGFF3741 and GFF3742 overlap by 31 nucleotides GFF3740 - putative exported protein, at 636,611 to 637,594 GFF3740 GFF3741 - Aldehyde dehydrogenase (EC 1.2.1.3), at 637,606 to 637,905 GFF3741 GFF3742 - Aldehyde dehydrogenase (EC 1.2.1.3), at 637,875 to 639,095 GFF3742 Position (kb) 637 638Strain fitness (log2 ratio) -1 0 1at 637.032 kb on + strand, within GFF3740at 637.119 kb on + strand, within GFF3740at 637.410 kb on + strand, within GFF3740at 637.758 kb on - strand, within GFF3741

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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637,032 + GFF3740 0.43 +1.1
637,119 + GFF3740 0.52 -0.6
637,410 + GFF3740 0.81 +0.9
637,758 - GFF3741 0.51 -1.0

Or see this region's nucleotide sequence