Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3663 and GFF3664 overlap by 4 nucleotides GFF3664 and GFF3665 overlap by 4 nucleotides GFF3665 and GFF3666 are separated by 364 nucleotides
GFF3663 - Assimilatory nitrate reductase large subunit (EC:1.7.99.4), at 547,127 to 549,907
GFF3663
GFF3664 - Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4), at 549,904 to 550,287
GFF3664
GFF3665 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 550,284 to 552,752
GFF3665
GFF3666 - Response regulator NasT, at 553,117 to 554,388
GFF3666
Position (kb) 550
551
552
553 Strain fitness (log2 ratio) -1
0
1 at 549.552 kb on + strand, within GFF3663 at 549.552 kb on + strand, within GFF3663 at 549.552 kb on + strand, within GFF3663 at 549.553 kb on - strand, within GFF3663 at 549.582 kb on + strand, within GFF3663 at 549.583 kb on - strand, within GFF3663 at 550.456 kb on + strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.501 kb on + strand at 550.624 kb on + strand, within GFF3665 at 550.624 kb on + strand, within GFF3665 at 550.625 kb on - strand, within GFF3665 at 550.711 kb on + strand, within GFF3665 at 550.711 kb on + strand, within GFF3665 at 550.712 kb on - strand, within GFF3665 at 550.732 kb on + strand, within GFF3665 at 550.732 kb on + strand, within GFF3665 at 550.732 kb on + strand, within GFF3665 at 550.732 kb on + strand, within GFF3665 at 550.732 kb on + strand, within GFF3665 at 550.733 kb on - strand, within GFF3665 at 550.733 kb on - strand, within GFF3665 at 550.733 kb on - strand, within GFF3665 at 550.733 kb on - strand, within GFF3665 at 550.899 kb on + strand, within GFF3665 at 551.039 kb on - strand, within GFF3665 at 551.134 kb on + strand, within GFF3665 at 551.137 kb on + strand, within GFF3665 at 551.138 kb on - strand, within GFF3665 at 551.305 kb on + strand, within GFF3665 at 551.677 kb on + strand, within GFF3665 at 551.677 kb on + strand, within GFF3665 at 551.801 kb on - strand, within GFF3665 at 552.625 kb on + strand at 552.625 kb on + strand at 552.625 kb on + strand at 552.626 kb on - strand at 552.664 kb on + strand at 552.665 kb on - strand at 552.760 kb on - strand at 552.848 kb on + strand at 552.848 kb on + strand at 552.848 kb on + strand at 552.848 kb on + strand at 552.849 kb on - strand at 552.849 kb on - strand at 552.849 kb on - strand at 552.849 kb on - strand at 553.004 kb on + strand at 553.005 kb on - strand at 553.117 kb on - strand at 553.411 kb on + strand, within GFF3666 at 553.412 kb on - strand, within GFF3666 at 553.744 kb on + strand, within GFF3666 at 553.745 kb on - strand, within GFF3666
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 549,552 + GFF3663 0.87 -0.3 549,552 + GFF3663 0.87 +0.4 549,552 + GFF3663 0.87 +1.7 549,553 - GFF3663 0.87 +1.7 549,582 + GFF3663 0.88 +0.4 549,583 - GFF3663 0.88 -1.0 550,456 + +0.5 550,481 - -0.0 550,481 - +1.0 550,481 - +0.2 550,481 - -0.0 550,501 + +0.7 550,624 + GFF3665 0.14 +0.1 550,624 + GFF3665 0.14 -0.5 550,625 - GFF3665 0.14 +0.4 550,711 + GFF3665 0.17 -0.5 550,711 + GFF3665 0.17 +0.4 550,712 - GFF3665 0.17 +0.9 550,732 + GFF3665 0.18 -0.3 550,732 + GFF3665 0.18 -0.1 550,732 + GFF3665 0.18 -0.4 550,732 + GFF3665 0.18 -0.4 550,732 + GFF3665 0.18 +1.2 550,733 - GFF3665 0.18 +0.8 550,733 - GFF3665 0.18 -1.3 550,733 - GFF3665 0.18 +0.8 550,733 - GFF3665 0.18 -0.5 550,899 + GFF3665 0.25 +0.4 551,039 - GFF3665 0.31 +0.7 551,134 + GFF3665 0.34 -0.2 551,137 + GFF3665 0.35 -0.4 551,138 - GFF3665 0.35 +0.4 551,305 + GFF3665 0.41 +0.2 551,677 + GFF3665 0.56 -0.5 551,677 + GFF3665 0.56 +0.2 551,801 - GFF3665 0.61 -0.3 552,625 + -0.2 552,625 + +0.1 552,625 + -0.4 552,626 - +0.7 552,664 + +1.0 552,665 - +0.7 552,760 - -0.0 552,848 + +0.1 552,848 + +0.8 552,848 + +0.2 552,848 + +1.1 552,849 - +0.7 552,849 - +0.3 552,849 - +0.1 552,849 - +0.3 553,004 + -0.3 553,005 - +0.5 553,117 - -0.3 553,411 + GFF3666 0.23 -1.2 553,412 - GFF3666 0.23 +0.2 553,744 + GFF3666 0.49 +0.5 553,745 - GFF3666 0.49 -0.0
Or see this region's nucleotide sequence