Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3641

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3639 and GFF3640 are separated by 67 nucleotidesGFF3640 and GFF3641 are separated by 5 nucleotidesGFF3641 and GFF3642 are separated by 75 nucleotides GFF3639 - Outer membrane protein A precursor, at 523,927 to 524,598 GFF3639 GFF3640 - Two-component hybrid sensor and regulator, at 524,666 to 525,127 GFF3640 GFF3641 - Mg(2+) transport ATPase protein C, at 525,133 to 525,657 GFF3641 GFF3642 - histidine kinase, at 525,733 to 527,007 GFF3642 Position (kb) 525 526Strain fitness (log2 ratio) -2 -1 0 1at 524.209 kb on + strand, within GFF3639at 524.209 kb on + strand, within GFF3639at 524.210 kb on - strand, within GFF3639at 524.210 kb on - strand, within GFF3639at 524.210 kb on - strand, within GFF3639at 524.219 kb on - strand, within GFF3639at 524.219 kb on - strand, within GFF3639at 524.219 kb on - strand, within GFF3639at 524.264 kb on - strand, within GFF3639at 524.386 kb on + strand, within GFF3639at 524.386 kb on + strand, within GFF3639at 524.386 kb on + strand, within GFF3639at 524.386 kb on + strand, within GFF3639at 524.386 kb on + strand, within GFF3639at 524.387 kb on - strand, within GFF3639at 524.387 kb on - strand, within GFF3639at 524.387 kb on - strand, within GFF3639at 524.387 kb on - strand, within GFF3639at 524.462 kb on - strand, within GFF3639at 524.462 kb on - strand, within GFF3639at 524.581 kb on + strandat 524.649 kb on + strandat 524.649 kb on + strandat 524.649 kb on + strandat 524.649 kb on + strandat 524.650 kb on - strandat 524.650 kb on - strandat 524.650 kb on - strandat 524.650 kb on - strandat 524.650 kb on - strandat 524.650 kb on - strandat 524.650 kb on - strandat 524.653 kb on + strandat 524.653 kb on + strandat 524.653 kb on + strandat 524.654 kb on - strandat 524.654 kb on - strandat 524.654 kb on - strandat 524.705 kb on + strandat 525.036 kb on - strand, within GFF3640at 526.187 kb on - strand, within GFF3642

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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524,209 + GFF3639 0.42 +0.6
524,209 + GFF3639 0.42 +0.9
524,210 - GFF3639 0.42 -0.8
524,210 - GFF3639 0.42 -0.2
524,210 - GFF3639 0.42 -0.2
524,219 - GFF3639 0.43 +0.1
524,219 - GFF3639 0.43 +1.0
524,219 - GFF3639 0.43 +0.4
524,264 - GFF3639 0.50 -0.6
524,386 + GFF3639 0.68 -0.8
524,386 + GFF3639 0.68 -1.4
524,386 + GFF3639 0.68 +0.3
524,386 + GFF3639 0.68 +0.5
524,386 + GFF3639 0.68 -0.1
524,387 - GFF3639 0.68 -0.1
524,387 - GFF3639 0.68 +0.1
524,387 - GFF3639 0.68 +0.8
524,387 - GFF3639 0.68 +0.1
524,462 - GFF3639 0.80 +0.0
524,462 - GFF3639 0.80 -0.3
524,581 + -0.0
524,649 + -0.2
524,649 + +1.1
524,649 + +0.7
524,649 + +0.2
524,650 - +0.4
524,650 - +0.4
524,650 - -0.2
524,650 - -0.3
524,650 - +0.7
524,650 - +1.1
524,650 - +0.7
524,653 + +0.9
524,653 + +1.2
524,653 + +0.3
524,654 - +0.2
524,654 - -0.0
524,654 - +0.5
524,705 + -1.0
525,036 - GFF3640 0.80 -0.2
526,187 - GFF3642 0.36 -1.8

Or see this region's nucleotide sequence