Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3636

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
520,610	+		GFF3635	0.73	+0.2
520,661	+		GFF3635	0.77	+0.3
520,661	+		GFF3635	0.77	+1.1
520,661	+		GFF3635	0.77	-1.3
520,877	+				+1.1
520,877	+				-0.3
520,877	+				-0.6
520,877	+				-0.4
520,934	+				-1.2
520,934	+				-0.4
520,935	-				+0.2
520,953	-				+0.5
521,859	-				-0.9
521,881	+				-0.4
521,881	+				-0.1
521,888	+				+0.4
521,889	-				-0.2
522,073	+				-0.1
522,169	+		GFF3638	0.12	-0.6
522,169	+		GFF3638	0.12	+0.1
522,169	+		GFF3638	0.12	-0.9
522,170	-		GFF3638	0.12	+0.8
522,170	-		GFF3638	0.12	-0.3