Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF35

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
31,720	+		GFF34	0.68	-0.2
31,720	+		GFF34	0.68	+0.2
31,721	-		GFF34	0.69	+0.0
31,721	-		GFF34	0.69	+0.0
31,721	-		GFF34	0.69	+0.3
31,753	+		GFF34	0.72	+0.6
31,954	+				-0.6
31,954	+				+0.6
31,954	+				-0.4
31,954	+				-0.3
31,954	+				+0.8
31,954	+				-0.1
31,955	-				+0.1
31,955	-				+1.2
31,955	-				+0.4
32,062	-				+0.2
32,253	+		GFF35	0.13	+0.0
32,253	+		GFF35	0.13	-0.5
32,457	+		GFF35	0.41	+0.0
32,682	+		GFF35	0.73	+1.1
32,737	-		GFF35	0.80	-0.5
33,000	-				-1.1
33,068	+		GFF36	0.15	-0.3
33,068	+		GFF36	0.15	+1.4
33,069	-		GFF36	0.15	-0.8
33,468	-		GFF36	0.57	-0.2
33,527	+		GFF36	0.63	+0.8
33,527	+		GFF36	0.63	+0.2
33,590	+		GFF36	0.70	-0.1
33,591	-		GFF36	0.70	-1.3
33,719	+		GFF36	0.83	+0.0