Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3480 and GFF3481 overlap by 4 nucleotides GFF3481 and GFF3482 overlap by 4 nucleotides GFF3482 and GFF3483 overlap by 13 nucleotides GFF3483 and GFF3484 are separated by 291 nucleotides
GFF3480 - Type IV secretory pathway, protease TraF, at 362,576 to 363,139
GFF3480
GFF3481 - Glycosidases, at 363,136 to 363,717
GFF3481
GFF3482 - FIG00457034: hypothetical protein, at 363,714 to 363,995
GFF3482
GFF3483 - Chromosome (plasmid) partitioning protein ParA, at 363,983 to 364,621
GFF3483
GFF3484 - Mobile element protein, at 364,913 to 365,908
GFF3484
Position (kb) 363
364
365 Strain fitness (log2 ratio) -2
-1
0
1 at 363.260 kb on + strand, within GFF3481 at 363.261 kb on - strand, within GFF3481 at 363.566 kb on + strand, within GFF3481 at 363.567 kb on - strand, within GFF3481 at 363.590 kb on + strand, within GFF3481 at 364.709 kb on - strand at 364.709 kb on - strand at 365.000 kb on + strand at 365.091 kb on - strand, within GFF3484 at 365.147 kb on + strand, within GFF3484 at 365.147 kb on + strand, within GFF3484 at 365.147 kb on + strand, within GFF3484 at 365.148 kb on - strand, within GFF3484 at 365.148 kb on - strand, within GFF3484 at 365.148 kb on - strand, within GFF3484 at 365.229 kb on + strand, within GFF3484 at 365.229 kb on + strand, within GFF3484 at 365.230 kb on - strand, within GFF3484 at 365.610 kb on + strand, within GFF3484 at 365.610 kb on + strand, within GFF3484 at 365.611 kb on - strand, within GFF3484 at 365.611 kb on - strand, within GFF3484 at 365.611 kb on - strand, within GFF3484 at 365.612 kb on + strand, within GFF3484 at 365.613 kb on - strand, within GFF3484
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 363,260 + GFF3481 0.21 +0.2 363,261 - GFF3481 0.21 -0.4 363,566 + GFF3481 0.74 +0.4 363,567 - GFF3481 0.74 -0.3 363,590 + GFF3481 0.78 +0.3 364,709 - +1.1 364,709 - +0.2 365,000 + -1.9 365,091 - GFF3484 0.18 -1.1 365,147 + GFF3484 0.23 -1.3 365,147 + GFF3484 0.23 +0.1 365,147 + GFF3484 0.23 -0.3 365,148 - GFF3484 0.24 +0.2 365,148 - GFF3484 0.24 -0.1 365,148 - GFF3484 0.24 -0.2 365,229 + GFF3484 0.32 +0.2 365,229 + GFF3484 0.32 +1.3 365,230 - GFF3484 0.32 -0.2 365,610 + GFF3484 0.70 +0.3 365,610 + GFF3484 0.70 -0.4 365,611 - GFF3484 0.70 +0.8 365,611 - GFF3484 0.70 +0.3 365,611 - GFF3484 0.70 +0.0 365,612 + GFF3484 0.70 -0.6 365,613 - GFF3484 0.70 -0.8
Or see this region's nucleotide sequence