Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF347 and GFF348 overlap by 14 nucleotides GFF348 and GFF349 are separated by 17 nucleotides
GFF347 - SAM-dependent methyltransferases, at 9,765 to 11,195
GFF347
GFF348 - Signal transduction histidine kinase, at 11,182 to 12,513
GFF348
GFF349 - Hydrogenase transcriptional regulatory protein HoxA, at 12,531 to 13,691
GFF349
Position (kb) 11
12
13 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 10.360 kb on - strand, within GFF347 at 10.407 kb on + strand, within GFF347 at 10.434 kb on + strand, within GFF347 at 10.446 kb on + strand, within GFF347 at 10.497 kb on + strand, within GFF347 at 10.497 kb on + strand, within GFF347 at 10.497 kb on + strand, within GFF347 at 10.497 kb on + strand, within GFF347 at 10.498 kb on - strand, within GFF347 at 10.498 kb on - strand, within GFF347 at 10.498 kb on - strand, within GFF347 at 10.498 kb on - strand, within GFF347 at 10.498 kb on - strand, within GFF347 at 10.743 kb on + strand, within GFF347 at 10.743 kb on + strand, within GFF347 at 10.744 kb on - strand, within GFF347 at 10.803 kb on + strand, within GFF347 at 10.803 kb on + strand, within GFF347 at 10.804 kb on - strand, within GFF347 at 10.804 kb on - strand, within GFF347 at 10.804 kb on - strand, within GFF347 at 10.887 kb on + strand, within GFF347 at 10.908 kb on + strand, within GFF347 at 10.944 kb on + strand, within GFF347 at 11.053 kb on - strand at 11.112 kb on + strand at 11.113 kb on - strand at 11.212 kb on + strand at 11.213 kb on - strand at 11.213 kb on - strand at 11.245 kb on + strand at 11.246 kb on - strand at 11.305 kb on + strand at 11.476 kb on + strand, within GFF348 at 11.504 kb on - strand, within GFF348 at 11.504 kb on - strand, within GFF348 at 11.504 kb on - strand, within GFF348 at 11.530 kb on + strand, within GFF348 at 11.531 kb on - strand, within GFF348 at 11.602 kb on + strand, within GFF348 at 11.602 kb on + strand, within GFF348 at 11.602 kb on + strand, within GFF348 at 11.602 kb on + strand, within GFF348 at 11.899 kb on + strand, within GFF348 at 11.900 kb on - strand, within GFF348 at 11.900 kb on - strand, within GFF348 at 12.115 kb on + strand, within GFF348 at 12.115 kb on + strand, within GFF348 at 12.115 kb on + strand, within GFF348 at 12.418 kb on + strand at 12.419 kb on - strand at 12.420 kb on - strand at 12.612 kb on + strand at 12.613 kb on - strand at 12.613 kb on - strand at 12.711 kb on + strand, within GFF349 at 12.712 kb on - strand, within GFF349 at 12.712 kb on - strand, within GFF349 at 13.029 kb on + strand, within GFF349 at 13.030 kb on - strand, within GFF349 at 13.350 kb on + strand, within GFF349
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 10,360 - GFF347 0.42 +0.8 10,407 + GFF347 0.45 -0.3 10,434 + GFF347 0.47 -0.1 10,446 + GFF347 0.48 +1.2 10,497 + GFF347 0.51 +1.0 10,497 + GFF347 0.51 -1.7 10,497 + GFF347 0.51 +0.3 10,497 + GFF347 0.51 -0.6 10,498 - GFF347 0.51 +0.9 10,498 - GFF347 0.51 +0.5 10,498 - GFF347 0.51 +0.3 10,498 - GFF347 0.51 -1.7 10,498 - GFF347 0.51 -1.1 10,743 + GFF347 0.68 -2.9 10,743 + GFF347 0.68 -0.4 10,744 - GFF347 0.68 +0.8 10,803 + GFF347 0.73 -2.0 10,803 + GFF347 0.73 +0.2 10,804 - GFF347 0.73 +0.4 10,804 - GFF347 0.73 +0.6 10,804 - GFF347 0.73 +0.7 10,887 + GFF347 0.78 -0.4 10,908 + GFF347 0.80 +0.7 10,944 + GFF347 0.82 -1.1 11,053 - -0.1 11,112 + +0.4 11,113 - -1.0 11,212 + +0.0 11,213 - -1.9 11,213 - -0.2 11,245 + +0.6 11,246 - +0.9 11,305 + +0.1 11,476 + GFF348 0.22 -0.2 11,504 - GFF348 0.24 -0.6 11,504 - GFF348 0.24 +0.4 11,504 - GFF348 0.24 -0.6 11,530 + GFF348 0.26 +0.3 11,531 - GFF348 0.26 +0.9 11,602 + GFF348 0.32 +0.9 11,602 + GFF348 0.32 -0.2 11,602 + GFF348 0.32 +0.4 11,602 + GFF348 0.32 -1.6 11,899 + GFF348 0.54 +0.9 11,900 - GFF348 0.54 +1.0 11,900 - GFF348 0.54 -1.4 12,115 + GFF348 0.70 +0.0 12,115 + GFF348 0.70 -0.5 12,115 + GFF348 0.70 +0.0 12,418 + -1.4 12,419 - -0.2 12,420 - +0.9 12,612 + +0.4 12,613 - +0.6 12,613 - +0.7 12,711 + GFF349 0.16 -0.1 12,712 - GFF349 0.16 -0.1 12,712 - GFF349 0.16 -1.4 13,029 + GFF349 0.43 +0.2 13,030 - GFF349 0.43 +0.2 13,350 + GFF349 0.71 +0.1
Or see this region's nucleotide sequence