Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3468 and GFF3469 overlap by 4 nucleotides GFF3469 and GFF3470 overlap by 4 nucleotides
GFF3468 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 348,717 to 349,862
GFF3468
GFF3469 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 349,859 to 350,929
GFF3469
GFF3470 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 350,926 to 352,593
GFF3470
Position (kb) 349
350
351 Strain fitness (log2 ratio) -1
0
1 at 348.909 kb on + strand, within GFF3468 at 349.014 kb on + strand, within GFF3468 at 349.168 kb on - strand, within GFF3468 at 349.168 kb on - strand, within GFF3468 at 349.677 kb on + strand, within GFF3468 at 349.678 kb on - strand, within GFF3468 at 349.678 kb on - strand, within GFF3468 at 349.686 kb on - strand, within GFF3468 at 349.686 kb on - strand, within GFF3468 at 349.686 kb on - strand, within GFF3468 at 349.813 kb on - strand at 350.217 kb on - strand, within GFF3469 at 350.282 kb on + strand, within GFF3469 at 350.282 kb on + strand, within GFF3469 at 350.283 kb on - strand, within GFF3469 at 350.283 kb on - strand, within GFF3469 at 350.283 kb on - strand, within GFF3469 at 350.455 kb on - strand, within GFF3469 at 350.555 kb on + strand, within GFF3469 at 350.564 kb on + strand, within GFF3469 at 350.564 kb on + strand, within GFF3469 at 350.565 kb on - strand, within GFF3469 at 350.605 kb on - strand, within GFF3469 at 350.840 kb on + strand at 350.841 kb on - strand at 350.935 kb on - strand at 350.994 kb on + strand at 351.082 kb on + strand at 351.083 kb on - strand at 351.167 kb on + strand, within GFF3470 at 351.167 kb on + strand, within GFF3470 at 351.299 kb on - strand, within GFF3470 at 351.299 kb on - strand, within GFF3470 at 351.569 kb on - strand, within GFF3470 at 351.666 kb on - strand, within GFF3470 at 351.771 kb on + strand, within GFF3470 at 351.909 kb on - strand, within GFF3470
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 348,909 + GFF3468 0.17 +0.2 349,014 + GFF3468 0.26 -0.3 349,168 - GFF3468 0.39 +0.0 349,168 - GFF3468 0.39 +0.2 349,677 + GFF3468 0.84 -0.9 349,678 - GFF3468 0.84 +0.6 349,678 - GFF3468 0.84 -0.8 349,686 - GFF3468 0.85 +0.2 349,686 - GFF3468 0.85 +0.2 349,686 - GFF3468 0.85 +0.0 349,813 - +0.5 350,217 - GFF3469 0.33 -1.2 350,282 + GFF3469 0.39 -0.1 350,282 + GFF3469 0.39 +0.0 350,283 - GFF3469 0.40 -0.2 350,283 - GFF3469 0.40 -0.4 350,283 - GFF3469 0.40 -1.0 350,455 - GFF3469 0.56 +0.1 350,555 + GFF3469 0.65 -0.3 350,564 + GFF3469 0.66 -0.6 350,564 + GFF3469 0.66 +0.6 350,565 - GFF3469 0.66 -1.0 350,605 - GFF3469 0.70 -0.4 350,840 + +0.4 350,841 - +0.3 350,935 - +0.3 350,994 + +1.4 351,082 + +0.9 351,083 - +0.2 351,167 + GFF3470 0.14 +1.4 351,167 + GFF3470 0.14 -0.1 351,299 - GFF3470 0.22 +0.7 351,299 - GFF3470 0.22 -0.7 351,569 - GFF3470 0.39 +0.3 351,666 - GFF3470 0.44 +0.5 351,771 + GFF3470 0.51 +0.2 351,909 - GFF3470 0.59 -0.4
Or see this region's nucleotide sequence