Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3458 and GFF3459 overlap by 89 nucleotides GFF3459 and GFF3460 overlap by 4 nucleotides GFF3460 and GFF3461 are separated by 38 nucleotides GFF3461 and GFF3462 are separated by 0 nucleotides
GFF3458 - Electron transfer flavoprotein, alpha subunit, at 338,934 to 339,878
GFF3458
GFF3459 - hypothetical protein, at 339,790 to 339,912
GFF3459
GFF3460 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 339,909 to 341,573
GFF3460
GFF3461 - Electron transfer flavoprotein, beta subunit, at 341,612 to 342,385
GFF3461
GFF3462 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 342,386 to 344,167
GFF3462
Position (kb) 339
340
341
342 Strain fitness (log2 ratio) -1
0
1 at 338.936 kb on - strand at 338.936 kb on - strand at 339.335 kb on - strand, within GFF3458 at 339.481 kb on + strand, within GFF3458 at 339.482 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.791 kb on + strand at 339.792 kb on - strand at 339.891 kb on + strand, within GFF3459 at 339.927 kb on - strand at 340.060 kb on + strand at 340.060 kb on + strand at 340.238 kb on - strand, within GFF3460 at 340.667 kb on - strand, within GFF3460 at 341.227 kb on - strand, within GFF3460 at 341.539 kb on + strand at 341.540 kb on - strand at 341.540 kb on - strand at 341.563 kb on + strand at 341.564 kb on - strand at 341.649 kb on - strand at 341.808 kb on + strand, within GFF3461 at 342.086 kb on + strand, within GFF3461 at 342.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 338,936 - +1.1 338,936 - +0.6 339,335 - GFF3458 0.42 +1.4 339,481 + GFF3458 0.58 -1.7 339,482 - GFF3458 0.58 -0.1 339,769 - GFF3458 0.88 -0.4 339,769 - GFF3458 0.88 +0.4 339,769 - GFF3458 0.88 +0.7 339,769 - GFF3458 0.88 -1.1 339,769 - GFF3458 0.88 -1.6 339,791 + +0.1 339,792 - +0.5 339,891 + GFF3459 0.82 +0.3 339,927 - -0.0 340,060 + +0.1 340,060 + +0.4 340,238 - GFF3460 0.20 +0.5 340,667 - GFF3460 0.46 +0.9 341,227 - GFF3460 0.79 -0.1 341,539 + -0.9 341,540 - +0.7 341,540 - +1.0 341,563 + -1.2 341,564 - -0.9 341,649 - +1.0 341,808 + GFF3461 0.25 +0.6 342,086 + GFF3461 0.61 -0.2 342,481 - +0.0
Or see this region's nucleotide sequence