Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3334

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3333 and GFF3334 are separated by 38 nucleotidesGFF3334 and GFF3335 are separated by 15 nucleotidesGFF3335 and GFF3336 are separated by 119 nucleotides GFF3333 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 218,714 to 219,691 GFF3333 GFF3334 - Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39), at 219,730 to 220,680 GFF3334 GFF3335 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 220,696 to 221,457 GFF3335 GFF3336 - Acyl carrier protein, at 221,577 to 221,816 GFF3336 Position (kb) 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1at 219.723 kb on + strandat 219.723 kb on + strandat 219.723 kb on + strandat 219.723 kb on + strandat 219.724 kb on - strandat 219.724 kb on - strandat 219.724 kb on - strandat 219.724 kb on - strandat 219.724 kb on - strandat 221.521 kb on + strandat 221.521 kb on + strandat 221.521 kb on + strandat 221.551 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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219,723 + -0.4
219,723 + +0.3
219,723 + -0.4
219,723 + +0.1
219,724 - +0.1
219,724 - -0.0
219,724 - -3.2
219,724 - -0.8
219,724 - -0.5
221,521 + +0.2
221,521 + -0.7
221,521 + +1.4
221,551 + -1.7

Or see this region's nucleotide sequence