Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3326 and GFF3327 are separated by 12 nucleotides GFF3327 and GFF3328 overlap by 4 nucleotides GFF3328 and GFF3329 are separated by 855 nucleotides
GFF3326 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 211,397 to 212,281
GFF3326
GFF3327 - Tetrapyrrole methylase family protein, at 212,294 to 213,097
GFF3327
GFF3328 - Septum formation protein Maf, at 213,094 to 213,708
GFF3328
GFF3329 - Retron-type RNA-directed DNA polymerase (EC 2.7.7.49), at 214,564 to 216,435
GFF3329
Position (kb) 213
214 Strain fitness (log2 ratio) -2
-1
0
1
2 at 212.114 kb on - strand, within GFF3326 at 212.171 kb on + strand, within GFF3326 at 212.171 kb on + strand, within GFF3326 at 212.172 kb on - strand, within GFF3326 at 212.650 kb on + strand, within GFF3327 at 212.650 kb on + strand, within GFF3327 at 212.650 kb on + strand, within GFF3327 at 212.650 kb on + strand, within GFF3327 at 213.063 kb on + strand at 213.063 kb on + strand at 213.063 kb on + strand at 213.063 kb on + strand at 213.064 kb on - strand at 213.098 kb on - strand at 213.098 kb on - strand at 213.098 kb on - strand at 213.715 kb on - strand at 213.733 kb on + strand at 213.733 kb on + strand at 213.733 kb on + strand at 213.734 kb on - strand at 213.734 kb on - strand at 213.734 kb on - strand at 213.734 kb on - strand at 213.769 kb on + strand at 213.769 kb on + strand at 213.769 kb on + strand at 213.769 kb on + strand at 213.769 kb on + strand at 213.770 kb on - strand at 213.770 kb on - strand at 213.777 kb on + strand at 213.777 kb on + strand at 213.777 kb on + strand at 213.777 kb on + strand at 213.789 kb on + strand at 213.790 kb on - strand at 213.790 kb on - strand at 213.790 kb on - strand at 213.790 kb on - strand at 213.798 kb on - strand at 213.811 kb on + strand at 213.812 kb on - strand at 213.944 kb on + strand at 213.996 kb on - strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.033 kb on + strand at 214.033 kb on + strand at 214.033 kb on + strand at 214.033 kb on + strand at 214.033 kb on + strand at 214.033 kb on + strand at 214.033 kb on + strand at 214.034 kb on - strand at 214.034 kb on - strand at 214.034 kb on - strand at 214.034 kb on - strand at 214.034 kb on - strand at 214.118 kb on + strand at 214.119 kb on - strand at 214.143 kb on + strand at 214.143 kb on + strand at 214.144 kb on - strand at 214.144 kb on - strand at 214.144 kb on - strand at 214.233 kb on + strand at 214.278 kb on + strand at 214.278 kb on + strand at 214.278 kb on + strand at 214.278 kb on + strand at 214.278 kb on + strand at 214.279 kb on - strand at 214.279 kb on - strand at 214.306 kb on + strand at 214.307 kb on - strand at 214.307 kb on - strand at 214.357 kb on + strand at 214.357 kb on + strand at 214.357 kb on + strand at 214.357 kb on + strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.394 kb on + strand at 214.395 kb on - strand at 214.456 kb on - strand at 214.522 kb on + strand at 214.523 kb on - strand at 214.523 kb on - strand at 214.523 kb on - strand at 214.523 kb on - strand at 214.562 kb on + strand at 214.562 kb on + strand at 214.562 kb on + strand at 214.563 kb on - strand at 214.574 kb on + strand at 214.574 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 212,114 - GFF3326 0.81 -2.3 212,171 + GFF3326 0.87 -2.6 212,171 + GFF3326 0.87 -2.0 212,172 - GFF3326 0.88 -2.1 212,650 + GFF3327 0.44 -0.8 212,650 + GFF3327 0.44 +0.0 212,650 + GFF3327 0.44 +0.0 212,650 + GFF3327 0.44 -0.2 213,063 + +0.5 213,063 + +0.6 213,063 + -0.9 213,063 + -0.4 213,064 - -0.3 213,098 - +0.4 213,098 - -0.5 213,098 - -0.2 213,715 - +2.2 213,733 + -0.6 213,733 + -0.6 213,733 + +0.4 213,734 - -0.4 213,734 - -0.4 213,734 - -0.3 213,734 - -0.1 213,769 + +0.6 213,769 + -0.5 213,769 + +0.5 213,769 + +0.9 213,769 + +0.6 213,770 - -0.0 213,770 - -1.2 213,777 + -0.3 213,777 + -0.2 213,777 + -0.2 213,777 + +1.7 213,789 + +0.5 213,790 - +0.9 213,790 - -0.0 213,790 - -1.1 213,790 - +1.1 213,798 - -0.8 213,811 + -0.4 213,812 - -1.6 213,944 + +0.0 213,996 - -0.8 214,029 + +0.9 214,029 + -0.3 214,029 + +0.9 214,029 + -0.6 214,029 + -0.0 214,029 + -0.1 214,029 + +0.7 214,029 + +0.5 214,029 + +0.1 214,029 + +0.5 214,030 - +0.7 214,030 - +0.3 214,030 - +0.0 214,030 - +0.2 214,030 - -0.4 214,030 - -2.4 214,030 - -0.2 214,030 - -0.5 214,030 - +0.0 214,030 - +0.2 214,030 - -0.1 214,030 - -0.7 214,030 - +0.8 214,030 - +1.1 214,033 + -1.0 214,033 + -0.3 214,033 + -0.3 214,033 + +0.3 214,033 + +0.6 214,033 + -0.3 214,033 + -0.2 214,034 - -0.2 214,034 - +0.1 214,034 - +0.0 214,034 - +0.1 214,034 - -0.1 214,118 + -0.2 214,119 - -0.1 214,143 + -0.5 214,143 + +0.4 214,144 - -1.3 214,144 - +0.7 214,144 - +1.0 214,233 + -0.0 214,278 + -0.6 214,278 + +0.6 214,278 + -1.4 214,278 + +0.1 214,278 + +0.5 214,279 - -0.0 214,279 - -1.2 214,306 + +0.4 214,307 - -0.1 214,307 - -0.3 214,357 + -0.1 214,357 + -0.3 214,357 + +0.1 214,357 + +0.1 214,358 - +1.0 214,358 - -0.6 214,358 - +0.1 214,358 - -0.1 214,358 - +1.0 214,358 - +1.6 214,358 - +0.6 214,358 - -0.5 214,358 - +0.6 214,358 - -0.1 214,358 - +0.1 214,394 + -1.0 214,395 - +0.1 214,456 - +0.6 214,522 + +0.0 214,523 - +0.0 214,523 - -0.4 214,523 - +0.8 214,523 - +0.3 214,562 + -0.7 214,562 + +0.4 214,562 + -1.0 214,563 - -0.1 214,574 + +0.1 214,574 + +0.5
Or see this region's nucleotide sequence