Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3265 and GFF3266 are separated by 2 nucleotides GFF3266 and GFF3267 are separated by 4 nucleotides GFF3267 and GFF3268 are separated by 7 nucleotides GFF3268 and GFF3269 are separated by 108 nucleotides
GFF3265 - Urease alpha subunit (EC 3.5.1.5), at 147,028 to 148,746
GFF3265
GFF3266 - Urease beta subunit (EC 3.5.1.5), at 148,749 to 149,054
GFF3266
GFF3267 - HupE-UreJ family metal transporter, at 149,059 to 149,631
GFF3267
GFF3268 - Urease gamma subunit (EC 3.5.1.5), at 149,639 to 149,941
GFF3268
GFF3269 - Two-component hybrid sensor and regulator, at 150,050 to 153,520
GFF3269
Position (kb) 149
150 Strain fitness (log2 ratio) -1
0
1 at 148.640 kb on + strand at 149.847 kb on + strand, within GFF3268 at 149.977 kb on + strand at 149.977 kb on + strand at 149.977 kb on + strand at 149.978 kb on - strand at 150.186 kb on - strand at 150.309 kb on - strand at 150.473 kb on + strand, within GFF3269 at 150.525 kb on - strand, within GFF3269 at 150.525 kb on - strand, within GFF3269
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 148,640 + -0.7 149,847 + GFF3268 0.69 +0.7 149,977 + -0.4 149,977 + -0.8 149,977 + +0.6 149,978 - -0.3 150,186 - +0.1 150,309 - -0.8 150,473 + GFF3269 0.12 -0.9 150,525 - GFF3269 0.14 -0.1 150,525 - GFF3269 0.14 +1.6
Or see this region's nucleotide sequence