Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3265

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3263 and GFF3264 overlap by 14 nucleotidesGFF3264 and GFF3265 are separated by 8 nucleotidesGFF3265 and GFF3266 are separated by 2 nucleotidesGFF3266 and GFF3267 are separated by 4 nucleotidesGFF3267 and GFF3268 are separated by 7 nucleotides GFF3263 - Urease accessory protein UreF, at 145,777 to 146,496 GFF3263 GFF3264 - Urease accessory protein UreE, at 146,483 to 147,019 GFF3264 GFF3265 - Urease alpha subunit (EC 3.5.1.5), at 147,028 to 148,746 GFF3265 GFF3266 - Urease beta subunit (EC 3.5.1.5), at 148,749 to 149,054 GFF3266 GFF3267 - HupE-UreJ family metal transporter, at 149,059 to 149,631 GFF3267 GFF3268 - Urease gamma subunit (EC 3.5.1.5), at 149,639 to 149,941 GFF3268 Position (kb) 147 148 149Strain fitness (log2 ratio) -1 0 1at 146.712 kb on + strand, within GFF3264at 146.712 kb on + strand, within GFF3264at 146.712 kb on + strand, within GFF3264at 146.713 kb on - strand, within GFF3264at 147.110 kb on + strandat 147.110 kb on + strandat 147.512 kb on + strand, within GFF3265at 148.640 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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146,712 + GFF3264 0.43 +0.1
146,712 + GFF3264 0.43 +0.8
146,712 + GFF3264 0.43 -0.1
146,713 - GFF3264 0.43 +0.3
147,110 + -1.6
147,110 + +0.1
147,512 + GFF3265 0.28 +0.7
148,640 + -0.7

Or see this region's nucleotide sequence