Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3216

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3214 and GFF3215 are separated by 443 nucleotidesGFF3215 and GFF3216 are separated by 36 nucleotidesGFF3216 and GFF3217 are separated by 7 nucleotidesGFF3217 and GFF3218 overlap by 4 nucleotidesGFF3218 and GFF3219 are separated by 205 nucleotides GFF3214 - histone-like protein, at 97,678 to 98,067 GFF3214 GFF3215 - hypothetical protein, at 98,511 to 99,017 GFF3215 GFF3216 - hypothetical protein, at 99,054 to 99,578 GFF3216 GFF3217 - hypothetical protein, at 99,586 to 99,996 GFF3217 GFF3218 - hypothetical protein, at 99,993 to 100,160 GFF3218 GFF3219 - hypothetical protein, at 100,366 to 101,523 GFF3219 Position (kb) 99 100Strain fitness (log2 ratio) -1 0 1at 98.243 kb on + strandat 98.243 kb on + strandat 98.611 kb on + strand, within GFF3215at 99.250 kb on - strand, within GFF3216at 100.342 kb on + strandat 100.504 kb on + strand, within GFF3219at 100.504 kb on + strand, within GFF3219at 100.504 kb on + strand, within GFF3219at 100.505 kb on - strand, within GFF3219

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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98,243 + -0.4
98,243 + +0.4
98,611 + GFF3215 0.20 -0.7
99,250 - GFF3216 0.37 -0.5
100,342 + -1.3
100,504 + GFF3219 0.12 +0.1
100,504 + GFF3219 0.12 +0.4
100,504 + GFF3219 0.12 +0.3
100,505 - GFF3219 0.12 -0.3

Or see this region's nucleotide sequence